ggKbase home page

13_1_40cm_3_scaffold_633

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_633_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..300
DNA (300bp) protein (100aa)
acT domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acT domain-containing protein id=14429420 bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
acT domain-containing protein
13_1_40cm_3_scaffold_633_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

386..1168
DNA (783bp) protein (261aa)
TatD family deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase id=3639821 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hydrolase TatD
13_1_40cm_3_scaffold_633_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1165..2103
DNA (939bp) protein (313aa)
aminopeptidase Y (EC:3.4.11.15)
Peptidase id=4029897 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Peptidase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_633_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2111..2398)
DNA (288bp) protein (96aa)
id=14628098 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4029901 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_5
unknown

Not on your lists

2460..2552
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_3_scaffold_633_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2572..3468
DNA (897bp) protein (299aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4029904 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3468..4214
DNA (747bp) protein (249aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative intramembrane serine protease id=2322384 bin=GWA2_Methylomirabilis_73_35 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_633_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4420..5298)
DNA (879bp) protein (293aa)
peptidase S58, DmpA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-aminopeptidase/D-esterase id=4429850 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_633_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5367..6419)
DNA (1053bp) protein (351aa)
id=4698146 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4698146 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_633_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6416..6931)
DNA (516bp) protein (172aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4429854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6983..7294
DNA (312bp) protein (104aa)
id=14625964 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14625964 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_3_scaffold_633_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7496..8569)
DNA (1074bp) protein (358aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8637..9359
DNA (723bp) protein (241aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=14625966 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
UTP-Glnb uridylyltransferase GlnD (EC:2.7.7.59)
13_1_40cm_3_scaffold_633_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9413..13792
DNA (4380bp) protein (1460aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
13_1_40cm_3_scaffold_633_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13854..14879
DNA (1026bp) protein (342aa)
Luciferase-like monooxygenase id=4412867 bin=GWF2_Methylomirabilis_70_14 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
13_1_40cm_3_scaffold_633_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15059..15754)
DNA (696bp) protein (232aa)
Aminotransferase, class I and II Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aminotransferase, class I and II id=4815551 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15891..16523)
DNA (633bp) protein (211aa)
tesA; TAP complex multifunctional esterase (EC:3.1.1.5 3.1.2.-); K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
tesA; multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) (EC:3.1.2.- 3.1.1.5)
GDSL-like Lipase/Acylhydrolase id=4815550 bin=GWA2_Methylomirabilis_73_35 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16550..17218
DNA (669bp) protein (223aa)
ybbA; ABC transporter ATPase (EC:3.6.3.-)
putative ABC transporter, ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC efflux transporter, ATPase subunit id=3112906 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_633_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17239..19761
DNA (2523bp) protein (841aa)
Putative Uncharacterized ABC-type transport system, permease component YbbP id=4815548 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative ABC transporter permease YbbP; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative ABC transporter permease YbbP
13_1_40cm_3_scaffold_633_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19798..20169
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=14626134 bin=bin7_NC10_sister species=Pandoraea sp. SD6-2 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_633_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20177..20569
DNA (393bp) protein (131aa)
id=4771416 Tax=GWA2_Rokubacteria_70_23_curated
id=14626178 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_3_scaffold_633_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20618..21859)
DNA (1242bp) protein (414aa)
biotin carboxylase-like Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
biotin carboxylase-like id=14626151 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
13_1_40cm_3_scaffold_633_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21891..22172)
DNA (282bp) protein (94aa)
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Nitrogen fixation protein NifU id=3597763 bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nitrogen-fixing NifU domain-containing protein
13_1_40cm_3_scaffold_633_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22244..23620)
DNA (1377bp) protein (459aa)
Radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=3597633 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
radical SAM protein
13_1_40cm_3_scaffold_633_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

23689..23895
DNA (207bp) protein (69aa)
Zinc finger, CDGSH-type id=14625183 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_3_scaffold_633_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(23898..24185)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4539026 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24820..25008
DNA (189bp) protein (63aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3776760 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_633_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25157..25933)
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Q7_SPHTD
Enoyl-CoA hydratase/isomerase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA hydratase/isomerase
13_1_40cm_3_scaffold_633_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(25930..26193)
DNA (264bp) protein (88aa)
Extracellular solute-binding protein family 1 id=4138946 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_3_scaffold_633_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26206..26388)
DNA (183bp) protein (61aa)
4-oxalocrotonate tautomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-] Tax=GWA2_Rokubacteria_73_35_curated
4-oxalocrotonate tautomerase id=4541114 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-oxalocrotonate tautomerase
Displaying items 1-30 of 37 in total

View Taxonomy