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13_1_40cm_3_scaffold_853

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_853_1
unknown

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comp(1..135)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_2
unknown

Not on your lists

comp(278..604)
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_3
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(761..1642)
DNA (882bp) protein (294aa)
TrmB family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein id=5040661 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
putative TrmB family transcriptional regulator
13_1_40cm_3_scaffold_853_4
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1642..2418)
DNA (777bp) protein (259aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PWB1_METMA
Signal peptidase, type IV-prepilin/preflagellin {ECO:0000313|EMBL:AKB26259.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;"
Signal peptidase, type IV - prepilin/preflagellin
13_1_40cm_3_scaffold_853_5
RBG_16_Archaea_50_20_curated, Archaea

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2610..2843
DNA (234bp) protein (78aa)
Regulatory protein, AsnC/Lrp family n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N314_9ARCH
AsnC family transcriptional regulator Tax=RBG_16_Archaea_50_20_curated
regulatory protein, AsnC/Lrp family
13_1_40cm_3_scaffold_853_6
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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2895..3131
DNA (237bp) protein (79aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000255|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000255|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000255|HAMAP-Rule:MF_01892};;
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=TIAS_THEPD
hypothetical protein
13_1_40cm_3_scaffold_853_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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3242..4180
DNA (939bp) protein (313aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46A49_METBF
tRNA(ile2) 2-agmatinylcytidine synthetase; K06932 Tax=RBG_13_Bathyarchaeota_46_16b_curated
OB-fold nucleic acid binding domain protein
13_1_40cm_3_scaffold_853_8
unknown

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comp(4304..4603)
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_9
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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comp(4955..5320)
DNA (366bp) protein (122aa)
Putative regulatory protein, ArsR n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN34_NITGG
regulatory protein, ArsR Tax=RBG_13_Bathyarchaeota_52_12_curated
hypothetical protein
13_1_40cm_3_scaffold_853_10

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5523..6560
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase n=1 Tax=planctomycete KSU-1 RepID=I3IR33_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:KKL71049.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
alcohol dehydrogenase
13_1_40cm_3_scaffold_853_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6678..6824)
DNA (147bp) protein (49aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16811.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
13_1_40cm_3_scaffold_853_12
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(6880..7239)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUG8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EGP94602.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarch
hypothetical protein
13_1_40cm_3_scaffold_853_13
RBG_16_Archaea_50_20_curated, Archaea

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comp(7515..8408)
DNA (894bp) protein (298aa)
Radical SAM domain protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMX9_NITGG
radical SAM domain-containing protein Tax=RBG_16_Archaea_50_20_curated
radical SAM domain-containing protein
13_1_40cm_3_scaffold_853_14

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comp(8441..9109)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-F05 RepID=UPI000368D784
Uncharacterized protein {ECO:0000313|EMBL:KKL70492.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
radical SAM domain-containing protein
13_1_40cm_3_scaffold_853_15
unknown

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9376..10578
DNA (1203bp) protein (401aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_16
unknown

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10575..11126
DNA (552bp) protein (184aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_17
unknown

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11141..11671
DNA (531bp) protein (177aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_18
unknown

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11796..12197
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_19
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(12202..12846)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000373AB61
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_3_scaffold_853_20
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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12979..13701
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDH0_NIAKG
hypothetical protein Tax=RBG_16_Thaumarchaeota_49_8_curated
hypothetical protein
13_1_40cm_3_scaffold_853_21

Not on your lists

comp(13681..15048)
DNA (1368bp) protein (456aa)
serS; Serine--tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EQ14_9ARCH
Marine sediment metagenome DNA, contig: S06H3_C00781 {ECO:0000313|EMBL:GAI02023.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
13_1_40cm_3_scaffold_853_22
Cenarchaeum symbiosum, Cenarchaeum, Cenarchaeales, Thaumarchaeota, Archaea

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15171..16061
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RVQ5_CENSY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK77422.1}; TaxID=414004 species="Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarchaeum.;" source="Cenarchaeum symbiosum (strain A).;"
13_1_40cm_3_scaffold_853_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16068..16412
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILE4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60358.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_3_scaffold_853_24
unknown

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16443..16652
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_25
unknown

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16996..17574
DNA (579bp) protein (193aa)

This feature has no annotations

13_1_40cm_3_scaffold_853_26
RBG_16_Archaea_50_20_curated, Archaea

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comp(17497..18714)
DNA (1218bp) protein (406aa)
coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein; K00441 coenzyme F420 hydrogenase beta subunit [EC:1.12.98.1] Tax=RBG_16_Archaea_50_20_curated
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JFM5_9ARCH
coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein
13_1_40cm_3_scaffold_853_27
GWA2_OD1_45_39_plus, Magasanikbacteria, Parcubacteria, Bacteria

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comp(18718..20307)
DNA (1590bp) protein (530aa)
Putative enzyme (EC:3.1.-.-)
UPF0051 protein Rv1461/MT1508 Tax=GWA2_OD1_45_39_plus
2-oxoglutarate ferredoxin oxidoreductase subunit beta id=4345523 bin=PER_GWC2_41_7 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
13_1_40cm_3_scaffold_853_28
RBG_16_Archaea_50_20_curated, Archaea

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comp(20314..21342)
DNA (1029bp) protein (343aa)
nuoD1; NADH-quinone oxidoreductase subunit D (EC:1.6.99.5) Tax=RBG_16_Archaea_50_20_curated
NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE89_NITGG
13_1_40cm_3_scaffold_853_29
RBG_16_Archaea_50_20_curated, Archaea

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comp(21887..22438)
DNA (552bp) protein (184aa)
NADH-quinone oxidoreductase subunit B (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RBG_16_Archaea_50_20_curated
Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=uncultured marine crenarchaeote HF4000_APKG6D3 RepID=B3T916_9ARCH
NADH-quinone oxidoreductase, B subunit
13_1_40cm_3_scaffold_853_30
unknown

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comp(22611..23054)
DNA (444bp) protein (148aa)

This feature has no annotations

Displaying items 1-30 of 58 in total

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