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13_1_40cm_3_scaffold_9081

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_9081_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..714)
DNA (714bp) protein (238aa)
tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain id=2936212 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_9081_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(767..1393)
DNA (627bp) protein (209aa)
N-(5'-phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
N-(5'-phosphoribosyl)anthranilate isomerase id=4714996 bin=GWC2_Nitrospirae-rel_56_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
N-(5'-phosphoribosyl)anthranilate isomerase
13_1_40cm_3_scaffold_9081_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1423..2208)
DNA (786bp) protein (262aa)
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHY4_RHOMR
13_1_40cm_3_scaffold_9081_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2215..3231)
DNA (1017bp) protein (339aa)
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase id=1708129 bin=GWB2_Proteobacteria_55_19 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
13_1_40cm_3_scaffold_9081_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3251..3967)
DNA (717bp) protein (239aa)
A rare lipoprotein A id=1973271 bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rlpA; A rare lipoprotein A precursor Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Sporulation domain-containing protein
13_1_40cm_3_scaffold_9081_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4247..5659)
DNA (1413bp) protein (471aa)
argS; arginyl-tRNA synthetase; K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=GWD2_Deltaproteobacteria_55_8_curated
argS; arginine--tRNA ligase (EC:6.1.1.19)
Arginine--tRNA ligase id=1973276 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_9081_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5967..6431)
DNA (465bp) protein (155aa)
kptA; RNA 2'-phosphotransferase (EC:2.7.1.-); K07559 putative RNA 2'-phosphotransferase [EC:2.7.1.-] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Probable RNA 2'-phosphotransferase n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A3Q6_THEGJ
RNA:NAD 2'-phosphotransferase
13_1_40cm_3_scaffold_9081_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6510..7394)
DNA (885bp) protein (295aa)
garR; tartronate semialdehyde reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] Tax=GWD2_Deltaproteobacteria_55_8_curated
garR; tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase id=1973279 bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_9081_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7419..7733)
DNA (315bp) protein (105aa)
Anti-ECFsigma factor, ChrR Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Anti-ECFsigma factor, ChrR id=1973288 bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_9081_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7989..8435)
DNA (447bp) protein (149aa)
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
50S ribosomal protein L17 id=2042471 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L17
13_1_40cm_3_scaffold_9081_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8439..9467)
DNA (1029bp) protein (343aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Geobacter sp. (strain M18) RepID=E8WUB7_GEOS8
DNA-directed RNA polymerase subunit alpha
13_1_40cm_3_scaffold_9081_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9490..9723)
DNA (234bp) protein (78aa)
30S ribosomal protein S4 id=2042483 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S4
13_1_40cm_3_scaffold_9081_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9735..10058)
DNA (324bp) protein (108aa)
30S ribosomal protein S4 n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=RS4_DESOH
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S4
13_1_40cm_3_scaffold_9081_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10072..10524)
DNA (453bp) protein (151aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
30S ribosomal protein S11 id=2042487 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S11
13_1_40cm_3_scaffold_9081_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10544..10927)
DNA (384bp) protein (128aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S13 id=2042490 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S13
13_1_40cm_3_scaffold_9081_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11101..11319)
DNA (219bp) protein (73aa)
translation initiation factor 1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Translation initiation factor IF-1 id=2042493 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
translation initiation factor 1
13_1_40cm_3_scaffold_9081_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11357..12115)
DNA (759bp) protein (253aa)
methionine aminopeptidase, type I (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase id=2042496 bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_9081_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12112..12594)
DNA (483bp) protein (161aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Adenylate kinase id=2042499 bin=GWD2_Deltaproteobacteria_55_8 species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
adenylate kinase
13_1_40cm_3_scaffold_9081_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12744..13151)
DNA (408bp) protein (136aa)
Protein translocase subunit SecY id=2042502 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
secY; preprotein translocase subunit SecY
13_1_40cm_3_scaffold_9081_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13123..13998)
DNA (876bp) protein (292aa)
Protein translocase subunit SecY n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7T9D4_DESML
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
secY; preprotein translocase subunit SecY
13_1_40cm_3_scaffold_9081_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13991..14281)
DNA (291bp) protein (97aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
50S ribosomal protein L15 id=2042506 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplO; 50S ribosomal protein L15
13_1_40cm_3_scaffold_9081_22
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14446..14943)
DNA (498bp) protein (166aa)
30S ribosomal protein S5 id=2042508 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=GWD2_Deltaproteobacteria_55_8_curated
30S ribosomal protein S5
13_1_40cm_3_scaffold_9081_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14967..15332)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
50S ribosomal protein L18 id=2042510 bin=GWD2_Deltaproteobacteria_55_8 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplR; 50S ribosomal protein L18
13_1_40cm_3_scaffold_9081_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15350..15901)
DNA (552bp) protein (184aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
50S ribosomal protein L6 id=2042512 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplF; 50S ribosomal protein L6
13_1_40cm_3_scaffold_9081_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15919..16323)
DNA (405bp) protein (135aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
30S ribosomal protein S8 id=2042514 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsH; 30S ribosomal protein S8
13_1_40cm_3_scaffold_9081_26
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16546..17040)
DNA (495bp) protein (165aa)
50S ribosomal protein L5 id=2042515 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
rplE; 50S ribosomal protein L5
13_1_40cm_3_scaffold_9081_27
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17386..17754)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=2042517 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
rplN; 50S ribosomal protein L14
13_1_40cm_3_scaffold_9081_28
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17792..18085)
DNA (294bp) protein (98aa)
30S ribosomal protein S17 id=2042518 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=GWD2_Deltaproteobacteria_55_8_curated
30S ribosomal protein S17
13_1_40cm_3_scaffold_9081_29
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18082..18291)
DNA (210bp) protein (70aa)
50S ribosomal protein L29 id=2042519 bin=GWD2_Deltaproteobacteria_55_8 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=GWD2_Deltaproteobacteria_55_8_curated
50S ribosomal protein L29
13_1_40cm_3_scaffold_9081_30
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18281..18583)
DNA (303bp) protein (101aa)
50S ribosomal protein L16 id=2042520 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=GWD2_Deltaproteobacteria_55_8_curated
rplP; 50S ribosomal protein L16
Displaying items 1-30 of 40 in total

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