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13_1_40cm_2_scaffold_12065

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_12065_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..605)
DNA (603bp) protein (201aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, XRE family id=4879989 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transcriptional regulator
13_1_40cm_2_scaffold_12065_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(656..4216)
DNA (3561bp) protein (1187aa)
condensin subunit Smc; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partition protein Smc id=2874900 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
condensin subunit Smc
13_1_40cm_2_scaffold_12065_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4375..7164)
DNA (2790bp) protein (930aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=14627675 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
secA; preprotein translocase subunit SecA
13_1_40cm_2_scaffold_12065_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7193..8881)
DNA (1689bp) protein (563aa)
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
recN; DNA repair and genetic recombination protein; K03631 DNA repair protein RecN (Recombination protein N) Tax=GWA2_Rokubacteria_73_35_curated
recN; DNA repair protein RecN
13_1_40cm_2_scaffold_12065_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8941..9798)
DNA (858bp) protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_12065_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9795..10604)
DNA (810bp) protein (270aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=GWA2_Rokubacteria_73_35_curated
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=14627678 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rRNA methyltransferase
13_1_40cm_2_scaffold_12065_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10604..11320)
DNA (717bp) protein (239aa)
Putative peptidase, S54 (Rhomboid) family id=2598285 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
peptidase, S54 (Rhomboid) family Tax=GWA2_Rokubacteria_73_35_curated
peptidase, S54 (Rhomboid) family
13_1_40cm_2_scaffold_12065_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11317..12627)
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_12065_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12624..13889)
DNA (1266bp) protein (422aa)
M16 family peptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase M16 domain protein
13_1_40cm_2_scaffold_12065_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14255..14962
DNA (708bp) protein (236aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2598292 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
collagen triple helix repeat protein
13_1_40cm_2_scaffold_12065_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15114..16394
DNA (1281bp) protein (427aa)
peptidase S46 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
periplasmic serine proteinase
13_1_40cm_2_scaffold_12065_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16529..17884)
DNA (1356bp) protein (452aa)
adenylosuccinate lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Adenylosuccinate lyase id=2598310 bin=GWA2_Methylomirabilis_73_35 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
adenylosuccinate lyase
13_1_40cm_2_scaffold_12065_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17877..18215)
DNA (339bp) protein (113aa)
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWA2_Rokubacteria_73_35_curated
histidine triad (HIT) protein
13_1_40cm_2_scaffold_12065_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18284..18403
DNA (120bp) protein (40aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4334200 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_12065_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(18438..19274)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I772_CALAS rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01110.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
13_1_40cm_2_scaffold_12065_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19297..20739)
DNA (1443bp) protein (481aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] id=14625343 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=CSP1_6_Rokubacteria
dihydropyrimidinase (EC:3.5.2.2)
13_1_40cm_2_scaffold_12065_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

20758..21360
DNA (603bp) protein (201aa)
Isochorismatase family protein id=3635570 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isochorismatase Tax=GWC2_Rokubacteria_70_16_curated
isochorismatase hydrolase
13_1_40cm_2_scaffold_12065_18
unknown

Not on your lists

comp(21430..21654)
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 18 items

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