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13_1_40cm_2_scaffold_13155

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_13155_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3..776)
DNA (774bp) protein (258aa)
methyltransferase type 11 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methyltransferase type 11 id=4306261 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
methyltransferase type 11
13_1_40cm_2_scaffold_13155_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(773..952)
DNA (180bp) protein (60aa)
Putative uncharacterized protein id=4306265 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_13155_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(969..1154)
DNA (186bp) protein (62aa)
id=3741115 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=3741115 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_13155_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1346..2926
DNA (1581bp) protein (527aa)
GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family with aminotransferase domain protein id=3619942 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GntR family transcriptional regulator
13_1_40cm_2_scaffold_13155_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2945..3841
DNA (897bp) protein (299aa)
pyridoxal biosynthesis lyase PdxS; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Pyridoxal biosynthesis lyase PdxS id=2591425 bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyridoxine biosynthesis protein
13_1_40cm_2_scaffold_13155_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3873..4475
DNA (603bp) protein (201aa)
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamine amidotransferase subunit PdxT id=2940470 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_13155_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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4518..5309
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alpha/beta hydrolase fold id=2940473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Alpha/beta hydrolase fold
13_1_40cm_2_scaffold_13155_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5406..6038
DNA (633bp) protein (211aa)
porD-like; pyruvate synthase subunit delta (EC:1.2.7.1); K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate id=3741131 bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
Displaying 8 items

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