ggKbase home page

13_1_40cm_2_scaffold_1602

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1602_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..688
DNA (687bp) protein (229aa)
urea amidolyase-like protein (EC:6.3.4.6)
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1602_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

685..2010
DNA (1326bp) protein (442aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
class III aminotransferase
13_1_40cm_2_scaffold_1602_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2023..2808
DNA (786bp) protein (262aa)
Lactam utilization-like protein (lamB); K07160 UPF0271 protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Lactam utilization-like protein (lamB); K07160 UPF0271 protein id=14628095 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
Lactam utilization-like protein (lamB)
13_1_40cm_2_scaffold_1602_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2850..3269
DNA (420bp) protein (140aa)
Uncharacterized protein id=4543822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_2_scaffold_1602_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3499..4152
DNA (654bp) protein (218aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alpha/beta hydrolase id=14626075 bin=bin7_NC10_sister species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
13_1_40cm_2_scaffold_1602_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4119..5300
DNA (1182bp) protein (394aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=GWA2_Rokubacteria_73_35_curated
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase id=4193474 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1602_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5303..5695
DNA (393bp) protein (131aa)
glycine cleavage system protein H id=4193475 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=GWA2_Rokubacteria_73_35_curated
glycine cleavage system H protein
13_1_40cm_2_scaffold_1602_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5695..7044
DNA (1350bp) protein (450aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=14628076 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
glycine dehydrogenase (decarboxylating) subunit 1 (EC:1.4.4.2)
13_1_40cm_2_scaffold_1602_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7044..8510
DNA (1467bp) protein (489aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] id=14628075 bin=bin7_NC10_sister species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
13_1_40cm_2_scaffold_1602_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8489..9313
DNA (825bp) protein (275aa)
lipoate protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Octanoyltransferase LipM id=5020377 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoate A/B protein ligase
13_1_40cm_2_scaffold_1602_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9310..9750
DNA (441bp) protein (147aa)
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NUDIX family hydrolase id=5020378 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus tenax genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphohydrolase
13_1_40cm_2_scaffold_1602_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9747..10481
DNA (735bp) protein (245aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1)
Probable cytosol aminopeptidase id=5020379 bin=GWA2_Methylomirabilis_73_35 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 12 items

View Taxonomy