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13_1_40cm_2_scaffold_21586

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_21586_1
unknown

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1..84
DNA (84bp) protein (28aa)

This feature has no annotations

13_1_40cm_2_scaffold_21586_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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106..423
DNA (318bp) protein (106aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626788 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_21586_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

445..729
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_21586_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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726..1970
DNA (1245bp) protein (415aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sugar phosphate permease id=3708852 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate permease
13_1_40cm_2_scaffold_21586_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1986..2924
DNA (939bp) protein (313aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_1_40cm_2_scaffold_21586_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3226..3906
DNA (681bp) protein (227aa)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
class I fumarate hydratase
13_1_40cm_2_scaffold_21586_7
unknown

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4055..4330
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_2_scaffold_21586_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4354..4533
DNA (180bp) protein (60aa)
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative thioredoxin Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_21586_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4549..4863
DNA (315bp) protein (105aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase-like thioredoxin
13_1_40cm_2_scaffold_21586_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5779..6336
DNA (558bp) protein (186aa)
integral membrane sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase
13_1_40cm_2_scaffold_21586_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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7244..7951
DNA (708bp) protein (236aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_40cm_2_scaffold_21586_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7959..8609
DNA (651bp) protein (217aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_40cm_2_scaffold_21586_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8653..9999
DNA (1347bp) protein (449aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_21586_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9996..10958
DNA (963bp) protein (321aa)
processing peptidase (EC:3.4.24.64) id=14627604 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
processing peptidase (EC:3.4.24.64)
peptidase M16 domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Displaying 14 items

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