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13_1_40cm_2_scaffold_6813

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6813_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(3..131)
DNA (129bp) protein (43aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_2_scaffold_6813_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(1149..1367)
DNA (219bp) protein (73aa)
Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_6813_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1559..1942)
DNA (384bp) protein (128aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
RNP-1 like RNA-binding protein
13_1_40cm_2_scaffold_6813_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2080..2433)
DNA (354bp) protein (118aa)
Transcriptional regulatory protein GlrR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulatory protein GlrR id=3708975 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6813_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2584..3936)
DNA (1353bp) protein (451aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_2_scaffold_6813_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3933..6974)
DNA (3042bp) protein (1014aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_6813_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6971..8566)
DNA (1596bp) protein (532aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
13_1_40cm_2_scaffold_6813_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8569..9828)
DNA (1260bp) protein (420aa)
Amidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
Displaying 8 items

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