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13_1_40cm_2_scaffold_7576

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_7576_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(136..390)
DNA (255bp) protein (85aa)
Transposase, putative Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transposase, putative id=3960120 bin=GWA2_Methylomirabilis_73_35 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_7576_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(554..928)
DNA (375bp) protein (125aa)
Fis family two component sigma-54 specific transcriptional regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein id=14626491 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
regulatory protein LuxO
13_1_40cm_2_scaffold_7576_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(925..2547)
DNA (1623bp) protein (541aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=3960116 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
cimA; alpha-isopropylmalate/homocitrate synthase family transferase
13_1_40cm_2_scaffold_7576_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2616..3812)
DNA (1197bp) protein (399aa)
CaiB/BaiF family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=3960114 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
CaiB/BaiF family protein
13_1_40cm_2_scaffold_7576_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3799..4230)
DNA (432bp) protein (144aa)
id=14626487 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14626487 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_7576_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4227..5351)
DNA (1125bp) protein (375aa)
Acetyl-CoA acetyltransferase-like protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Acetyl-CoA acetyltransferase-like protein id=3960112 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Acetyl-CoA acetyltransferase-like protein
13_1_40cm_2_scaffold_7576_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5467..5775)
DNA (309bp) protein (103aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Sigma-54 dependent transcriptional regulator, Fis family id=3992856 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_7576_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5825..6091)
DNA (267bp) protein (89aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
7Fe ferredoxin id=14626484 bin=bin7_NC10_sister species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
fdxA; ferredoxin
13_1_40cm_2_scaffold_7576_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6294..7190)
DNA (897bp) protein (299aa)
uncharacterized LOC100637730 id=14626483 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
uncharacterized LOC100637730 Tax=CSP1_6_Rokubacteria
glutathione transport system permease GsiD
13_1_40cm_2_scaffold_7576_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7190..8143)
DNA (954bp) protein (318aa)
Putative peptide ABC transporter permease protein id=4119975 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
gsiC; glutathione transport system permease GsiC
13_1_40cm_2_scaffold_7576_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8172..9752)
DNA (1581bp) protein (527aa)
Probable ABC transporter substrate binding protein id=3880333 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_7576_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9799..10287)
DNA (489bp) protein (163aa)
Probable ABC transporter substrate binding protein id=4849829 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter substrate-binding protein
Displaying 12 items

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