ggKbase home page

13_1_40cm_2_scaffold_9624

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_9624_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33..1526)
DNA (1494bp) protein (498aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoD; RNA polymerase sigma factor rpoD
13_1_40cm_2_scaffold_9624_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1775..3208
DNA (1434bp) protein (478aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] id=14625391 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
malate dehydrogenase (EC:1.1.1.38)
13_1_40cm_2_scaffold_9624_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3205..3927
DNA (723bp) protein (241aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_9624_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3924..5081
DNA (1158bp) protein (386aa)
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
aspartate aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
aspartate aminotransferase
13_1_40cm_2_scaffold_9624_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5078..5857
DNA (780bp) protein (260aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=2265648 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 12 methyltransferase
13_1_40cm_2_scaffold_9624_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5854..8010
DNA (2157bp) protein (719aa)
Putative uncharacterized protein id=2265650 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_9624_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8023..8679
DNA (657bp) protein (219aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
nth; endonuclease III (EC:4.2.99.18)
13_1_40cm_2_scaffold_9624_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8761..9210
DNA (450bp) protein (150aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L13
13_1_40cm_2_scaffold_9624_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


9210..9608
DNA (399bp) protein (133aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S9 id=2265656 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
13_1_40cm_2_scaffold_9624_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9662..10675
DNA (1014bp) protein (338aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase id=2265658 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_9624_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10680..11897
DNA (1218bp) protein (406aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ id=2265660 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_9624_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


12062..12832
DNA (771bp) protein (257aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S2 id=2265661 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S2
13_1_40cm_2_scaffold_9624_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12835..13443
DNA (609bp) protein (203aa)
translation elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Elongation factor Ts id=2265662 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tsf; elongation factor Ts
13_1_40cm_2_scaffold_9624_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13446..14186
DNA (741bp) protein (247aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase id=2265663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_9624_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14190..14744
DNA (555bp) protein (185aa)
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ribosome-recycling factor id=2265664 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome recycling factor
13_1_40cm_2_scaffold_9624_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14768..15565
DNA (798bp) protein (266aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase id=2265665 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_9624_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15562..16737
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] id=14625407 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
13_1_40cm_2_scaffold_9624_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16734..18101
DNA (1368bp) protein (456aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] id=14625408 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rseP; regulator of sigma E protease (EC:3.4.24.-)
13_1_40cm_2_scaffold_9624_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18111..18524
DNA (414bp) protein (138aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase id=3388820 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying 19 items

View Taxonomy