ggKbase home page
Advanced Search
Search Help

13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 301-350 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_197200
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1202 bp 52.41 3.55 92.35
13_1_20cm_4_scaffold_256644
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1030 bp 56.80 3.66 83.88
13_1_20cm_4_scaffold_228075
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)
2 1111 bp 53.83 3.61 99.37
13_1_20cm_4_scaffold_262866
Species: RHI_RIF-OD1-04_45_11b (50%)
2 1013 bp 50.35 4.71 97.43
13_1_20cm_4_scaffold_22439
Species: Natrinema gari (50%)
2 3054 bp 49.90 4.52 81.83
13_1_20cm_4_scaffold_147205
Species: Thermoplasmatales archaeon I-plasma (50%)
2 1372 bp 51.75 21.22 99.49
13_1_20cm_4_scaffold_84962
Species: Archaeoglobus sulfaticallidus (50%)
2 1741 bp 49.63 5.05 99.60
13_1_20cm_4_scaffold_240057
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1076 bp 52.23 3.27 98.42
13_1_20cm_4_scaffold_156885
Species: RBG_16_Euryarchaeota_62_10_curated (50%)
2 1334 bp 49.18 15.43 68.82
13_1_20cm_4_scaffold_173934
Species: Methanosarcina barkeri (50%)
2 1274 bp 56.99 9.26 52.98
13_1_20cm_4_scaffold_118177
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1511 bp 52.68 6.81 76.24
13_1_20cm_4_scaffold_263560
Species: RBG_16_Archaea_50_20_curated (100%)
2 1012 bp 50.69 9.67 75.59
13_1_20cm_4_scaffold_50403
Species: RBG_16_Archaea_50_20_curated (50%)
2 2189 bp 51.76 9.06 89.63
13_1_20cm_4_scaffold_121175
Species: RBG_16_Archaea_50_20_curated (100%)
2 1496 bp 52.74 5.37 96.26
13_1_20cm_4_scaffold_180619
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1253 bp 53.07 3.61 99.60
13_1_20cm_4_scaffold_208268
Species: Halovivax ruber (50%)
2 1169 bp 56.29 1.93 46.96
13_1_20cm_4_scaffold_230387
Species: Methanosarcina sp. 1.H.T.1A.1 (50%)
2 1104 bp 56.97 9.78 85.33
13_1_20cm_4_scaffold_247668
Species: RBG_16_Archaea_50_20_curated (50%)
2 1054 bp 51.04 3.10 74.86
13_1_20cm_4_scaffold_177858
Species: uncultured prokaryote (50%)
2 1261 bp 45.60 4.78 78.27
13_1_20cm_4_scaffold_100442
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1621 bp 50.77 5.42 57.00
13_1_20cm_4_scaffold_180392
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1253 bp 54.19 11.22 101.76
13_1_20cm_4_scaffold_137769
Species: Pyrinomonas methylaliphatogenes (50%)
2 1412 bp 55.31 5.16 100.28
13_1_20cm_4_scaffold_166108
Species: RBG_16_Archaea_50_20_curated (100%)
2 1300 bp 51.00 5.79 59.54
13_1_20cm_4_scaffold_171869
Species: RBG_16_Archaea_50_20_curated (100%)
2 1281 bp 51.76 2.94 96.72
13_1_20cm_4_scaffold_70224
Species: uncultured archaeon (50%)
2 1890 bp 49.95 3.72 99.21
13_1_20cm_4_scaffold_83359
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 2672 bp 51.76 8.92 88.47
13_1_20cm_4_scaffold_95109
Species: Methanolobus psychrophilus (50%)
2 1659 bp 51.05 6.66 80.11
13_1_20cm_4_scaffold_52946
Species: RBG_16_Chloroflexi_50_9_curated (50%)
2 2132 bp 56.71 2.94 100.05
13_1_20cm_4_scaffold_189380
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1225 bp 52.16 4.30 95.02
13_1_20cm_4_scaffold_190070
Species: Thermococcus eurythermalis (50%)
2 1223 bp 53.88 15.80 94.93
13_1_20cm_4_scaffold_192144
Species: Marine Group I thaumarchaeote SCGC AAA799-P11 (50%)
2 1217 bp 38.13 5.16 93.43
13_1_20cm_4_scaffold_209887
Species: Pyrinomonas methylaliphatogenes (100%)
2 1165 bp 56.91 6.89 83.43
13_1_20cm_4_scaffold_210115
Species: Halococcus thailandensis (50%)
2 1164 bp 53.87 4.31 78.35
13_1_20cm_4_scaffold_231774
Species: Chthoniobacter flavus (50%)
2 1100 bp 55.82 2.97 78.55
13_1_20cm_4_scaffold_244446
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1063 bp 50.05 4.49 99.62
13_1_20cm_4_scaffold_209657
Species: halophilic archaeon J07HX5 (50%)
2 1165 bp 52.27 7.54 91.16
13_1_20cm_4_scaffold_177631
Species: Halococcus salifodinae (50%)
2 1262 bp 50.08 4.38 86.77
13_1_20cm_4_scaffold_247211
Species: Methanosphaerula palustris (50%)
2 1056 bp 54.64 9.51 91.48
13_1_20cm_4_scaffold_124179
Species: Halovivax ruber (50%)
2 1480 bp 50.95 4.24 85.14
13_1_20cm_4_scaffold_90274
Species: Thermoplasmatales archaeon E-plasma (50%)
2 2590 bp 52.97 3.49 75.29
13_1_20cm_4_scaffold_218875
Species: RBG_16_Archaea_50_20_curated (50%)
2 1138 bp 51.41 3.53 78.56
13_1_20cm_4_scaffold_125101
Species: RBG_16_Archaea_50_20_curated (50%)
2 2454 bp 53.30 5.22 98.41
13_1_20cm_4_scaffold_244219
Species: Methanobacterium sp. Maddingley MBC34 (50%)
2 1064 bp 50.85 15.33 59.49
13_1_20cm_4_scaffold_239844
Species: Palaeococcus pacificus (50%)
2 1077 bp 53.48 17.01 80.50
13_1_20cm_4_scaffold_192150
Species: Methanobacterium paludis (50%)
2 1217 bp 55.88 5.16 65.32
13_1_20cm_4_scaffold_78527
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1800 bp 49.72 5.58 33.17
13_1_20cm_4_scaffold_113816
Species: Ferroplasma acidarmanus (50%)
2 1536 bp 50.07 5.39 59.96
13_1_20cm_4_scaffold_259430
Species: Chondromyces apiculatus (50%)
2 1022 bp 54.70 4.18 96.58
13_1_20cm_4_scaffold_84751
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 2393 bp 50.40 12.17 61.93
13_1_20cm_4_scaffold_219341
Species: RBG_16_Archaea_50_20_curated (50%)
2 1137 bp 51.98 3.97 94.46
Displaying items 301-350 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.