ggKbase home page
Advanced Search
Search Help

13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 351-400 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_225562
Species: Natrinema pallidum (50%)
2 1118 bp 56.26 3.37 96.87
13_1_20cm_4_scaffold_243094
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1067 bp 51.64 9.41 99.81
13_1_20cm_4_scaffold_141467
Species: Thermococcus gammatolerans (50%)
2 2651 bp 56.51 5.11 91.78
13_1_20cm_4_scaffold_151836
Species: Methanobacterium paludis (50%)
2 1353 bp 55.28 3.15 76.72
13_1_20cm_4_scaffold_50192
Species: Methanoregula formicica (50%)
2 2182 bp 51.01 5.41 81.67
13_1_20cm_4_scaffold_93279
Species: Halorubrum saccharovorum (50%)
2 1673 bp 56.60 3.75 93.96
13_1_20cm_4_scaffold_165661
Species: RBG_16_Bathyarchaeota_57_9_curated (50%)
2 1302 bp 52.07 17.16 74.65
13_1_20cm_4_scaffold_129027
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1455 bp 49.35 8.97 78.14
13_1_20cm_4_scaffold_38213
Species: Aciduliprofundum boonei (50%)
2 2448 bp 51.55 5.33 57.48
13_1_20cm_4_scaffold_108500
Species: RBG_16_Archaea_50_20_curated (50%)
2 1569 bp 51.12 5.28 100.19
13_1_20cm_4_scaffold_223031
Species: Methanococcoides methylutens (50%)
2 1125 bp 38.13 3.35 53.60
13_1_20cm_4_scaffold_158060
Species: Thermofilum pendens (50%)
2 1329 bp 51.39 14.35 97.97
13_1_20cm_4_scaffold_88905
Species: RBG_13_Bathyarchaeota_46_16b_curated (100%)
2 1708 bp 53.92 4.70 99.94
13_1_20cm_4_scaffold_155066
Species: Parcubacteria bacterium GW2011_GWF2_40_69 (50%)
2 1340 bp 55.75 5.06 100.30
13_1_20cm_4_scaffold_199073
Species: R_NC10_66_22 (50%)
2 1196 bp 53.51 3.57 90.55
13_1_20cm_4_scaffold_171887
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 1281 bp 51.68 3.33 85.25
13_1_20cm_4_scaffold_216123
Species: Methanobacterium paludis (50%)
2 1146 bp 47.12 2.63 99.74
13_1_20cm_4_scaffold_93054
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1675 bp 52.42 7.49 68.60
13_1_20cm_4_scaffold_111753
Species: Chthoniobacter flavus (50%)
2 1548 bp 56.20 2.43 97.29
13_1_20cm_4_scaffold_194468
Species: RBG_16_Archaea_50_20_curated (50%)
2 1210 bp 52.81 6.43 102.65
13_1_20cm_4_scaffold_254832
Species: Halogranum salarium (50%)
2 1035 bp 50.34 7.03 91.59
13_1_20cm_4_scaffold_142166
Species: RIFOXYB2_FULL_RIF07_49_35_curated (50%)
2 1393 bp 54.99 4.50 97.34
13_1_20cm_4_scaffold_142858
Species: RBG_16_Archaea_50_20_curated (50%)
2 1390 bp 51.08 16.25 69.06
13_1_20cm_4_scaffold_207831
Species: RBG_16_Archaea_50_20_curated (50%)
2 1171 bp 52.09 3.22 54.82
13_1_20cm_4_scaffold_223499
Species: archaeon Loki (50%)
2 1124 bp 49.38 5.36 99.29
13_1_20cm_4_scaffold_99046
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1630 bp 51.47 6.31 93.87
13_1_20cm_4_scaffold_181335
Species: Thermoplasmatales archaeon E-plasma (50%)
2 1250 bp 53.12 5.42 78.48
13_1_20cm_4_scaffold_132952
Species: Halorubrum kocurii (50%)
2 1435 bp 51.57 2.80 91.57
13_1_20cm_4_scaffold_209907
Species: Archaeoglobus veneficus (50%)
2 1165 bp 51.16 26.93 95.28
13_1_20cm_4_scaffold_107630
Species: Halorhabdus utahensis (50%)
2 1574 bp 51.78 4.94 88.82
13_1_20cm_4_scaffold_131088
Species: RBG_16_Archaea_50_20_curated (50%)
2 1444 bp 52.35 5.91 99.72
13_1_20cm_4_scaffold_157377
Species: Methanosarcina barkeri (50%)
2 1332 bp 53.08 3.77 89.64
13_1_20cm_4_scaffold_237325
Species: Halorubrum saccharovorum (50%)
2 1084 bp 55.07 4.63 66.97
13_1_20cm_4_scaffold_148622
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1366 bp 48.98 4.23 34.92
13_1_20cm_4_scaffold_229723
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1106 bp 55.52 5.45 99.55
13_1_20cm_4_scaffold_119592
Species: Methanocaldococcus sp. JH146 (50%)
2 1504 bp 53.99 4.01 99.93
13_1_20cm_4_scaffold_110376
Species: Methanobacterium sp. MB1 (50%)
2 1557 bp 53.18 6.13 100.19
13_1_20cm_4_scaffold_133878
Species: Methanosarcina mazei (50%)
2 1431 bp 47.38 4.03 69.39
13_1_20cm_4_scaffold_72093
Species: RBG_16_Archaea_50_20_curated (100%)
2 1868 bp 54.60 3.09 99.73
13_1_20cm_4_scaffold_84075
Species: Methanobacterium sp. MB1 (50%)
2 1749 bp 48.60 6.31 88.68
13_1_20cm_4_scaffold_220069
Species: Methanosarcina acetivorans (50%)
2 1134 bp 50.88 8.85 88.10
13_1_20cm_4_scaffold_98360
Species: RBG_16_Archaea_50_20_curated (100%)
2 1635 bp 51.25 5.22 98.35
13_1_20cm_4_scaffold_172124
Species: Pyrococcus horikoshii (50%)
2 1280 bp 53.75 4.71 85.78
13_1_20cm_4_scaffold_139178
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
2 1406 bp 53.34 4.11 82.57
13_1_20cm_4_scaffold_154846
Species: Methanosaeta harundinacea (50%)
2 1341 bp 47.95 5.05 87.92
13_1_20cm_4_scaffold_12305
Species: Pyrinomonas methylaliphatogenes (50%)
2 3897 bp 56.86 9.47 87.37
13_1_20cm_4_scaffold_57810
Species: RBG_16_Archaea_50_20_curated (50%)
2 2052 bp 53.22 5.50 53.80
13_1_20cm_4_scaffold_198392
Species: Methanosarcina mazei (50%)
2 1198 bp 51.00 2.10 92.90
13_1_20cm_4_scaffold_166367
Species: RLO_Nitrospinae_39_16 (50%)
2 1299 bp 52.81 5.41 77.60
13_1_20cm_4_scaffold_243760
Species: RBG_16_Chloroflexi_64_32_curated (50%)
2 1065 bp 51.08 4.95 46.76
Displaying items 351-400 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.