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13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 401-450 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_88918
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1708 bp 55.85 11.90 86.59
13_1_20cm_4_scaffold_94908
Species: GWC2_Deltaproteobacteria_42_11_curated (50%)
2 1661 bp 52.98 4.08 96.63
13_1_20cm_4_scaffold_238945
Species: Methanobacterium lacus (50%)
2 1079 bp 53.01 10.70 98.15
13_1_20cm_4_scaffold_19033
Species: Methanocella conradii (50%)
2 3264 bp 55.97 4.54 97.43
13_1_20cm_4_scaffold_126971
Species: archaeon GW2011_AR20 (50%)
2 1465 bp 52.83 8.74 82.73
13_1_20cm_4_scaffold_134804
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 1426 bp 55.47 3.87 99.93
13_1_20cm_4_scaffold_215676
Species: Metallosphaera yellowstonensis (50%)
2 1148 bp 53.75 9.84 62.98
13_1_20cm_4_scaffold_189410
Species: Archaeoglobus fulgidus (50%)
2 1225 bp 34.86 2.05 97.22
13_1_20cm_4_scaffold_86616
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1726 bp 49.54 5.53 53.71
13_1_20cm_4_scaffold_143330
Species: RBG_16_Archaea_50_20_curated (50%)
2 1388 bp 51.08 5.97 85.37
13_1_20cm_4_scaffold_247242
Species: marine sediment metagenome (100%)
2 1056 bp 52.37 3.80 81.25
13_1_20cm_4_scaffold_249547
Species: archaeon GW2011_AR9 (50%)
2 1049 bp 50.05 4.07 80.65
13_1_20cm_4_scaffold_137802
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 1412 bp 53.61 3.20 89.24
13_1_20cm_4_scaffold_145175
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1380 bp 53.55 2.55 88.91
13_1_20cm_4_scaffold_210609
Species: RBG_16_Archaea_50_20_curated (100%)
2 1163 bp 51.59 3.24 97.76
13_1_20cm_4_scaffold_105778
Species: R_Acidobacteria_65_29 (50%)
2 1585 bp 57.22 3.17 62.08
13_1_20cm_4_scaffold_265468
Species: Geoglobus ahangari (50%)
2 1007 bp 48.26 5.23 103.08
13_1_20cm_4_scaffold_85236
Species: RBG_16_Archaea_50_20_curated (50%)
2 1738 bp 53.97 14.30 99.60
13_1_20cm_4_scaffold_121676
Species: Methanofollis liminatans (50%)
2 1493 bp 54.86 3.19 102.88
13_1_20cm_4_scaffold_72333
Species: RBG_16_Archaea_50_20_curated (50%)
2 1865 bp 47.45 5.38 64.83
13_1_20cm_4_scaffold_179278
Species: BJP_IG2102_Methanoregula_52_95 (50%)
2 1257 bp 49.16 3.39 85.44
13_1_20cm_4_scaffold_136192
Species: RBG_13_Actinobacteria_55_18_curated (50%)
2 1420 bp 52.39 3.89 95.49
13_1_20cm_4_scaffold_195637
Species: Roseiflexus sp. RS-1 (50%)
2 1206 bp 52.57 2.08 95.77
13_1_20cm_4_scaffold_117762
Species: RBG_16_Archaea_50_20_curated (50%)
2 1514 bp 52.51 7.13 75.10
13_1_20cm_4_scaffold_65194
Species: RBG_16_Euryarchaeota_67_27_curated (50%)
2 1950 bp 53.44 5.66 90.00
13_1_20cm_4_scaffold_143567
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1387 bp 51.41 33.84 73.11
13_1_20cm_4_scaffold_153453
Species: Corynebacterium efficiens (50%)
2 1347 bp 52.56 5.03 100.45
13_1_20cm_4_scaffold_138269
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1410 bp 52.41 4.27 97.23
13_1_20cm_4_scaffold_267986
Species: RBG_13_Ignavibacteria_36_8_curated (50%)
2 1000 bp 49.30 25.85 66.60
13_1_20cm_4_scaffold_168452
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1292 bp 50.85 12.24 100.08
13_1_20cm_4_scaffold_238955
Species: marine sediment metagenome (50%)
2 1079 bp 51.44 1.86 98.15
13_1_20cm_4_scaffold_24771
Species: marine sediment metagenome (50%)
2 2935 bp 51.11 13.26 86.88
13_1_20cm_4_scaffold_141956
Species: RBG_16_Euryarchaeota_41_19_curated (50%)
2 1394 bp 50.65 16.93 98.78
13_1_20cm_4_scaffold_91463
Species: Methanobacterium formicicum (50%)
2 1687 bp 53.70 5.80 90.69
13_1_20cm_4_scaffold_100023
Species: RBG_16_Archaea_50_20_curated (50%)
2 2934 bp 54.19 6.33 99.90
13_1_20cm_4_scaffold_214073
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1152 bp 52.26 8.93 88.28
13_1_20cm_4_scaffold_215917
Species: Pyrinomonas methylaliphatogenes (100%)
2 1147 bp 56.67 3.72 100.17
13_1_20cm_4_scaffold_68658
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1908 bp 50.47 5.39 86.32
13_1_20cm_4_scaffold_167076
Species: RBG_16_Archaea_50_20_curated (50%)
2 1297 bp 50.19 5.61 42.79
13_1_20cm_4_scaffold_176061
Species: Candidatus Nitrososphaera evergladensis (50%)
2 1267 bp 44.75 3.37 98.97
13_1_20cm_4_scaffold_247947
Species: halophilic archaeon J07HX64 (50%)
2 1053 bp 52.90 3.10 97.15
13_1_20cm_4_scaffold_215921
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1147 bp 53.27 3.28 99.13
13_1_20cm_4_scaffold_216151
Species: uncultured miscellaneous Crenarchaeota group (50%)
2 1146 bp 53.14 3.50 99.74
13_1_20cm_4_scaffold_36402
Species: RBG_16_Archaea_50_20_curated (100%)
2 2499 bp 53.30 4.52 93.28
13_1_20cm_4_scaffold_36634
Species: Methanothermobacter thermautotrophicus (50%)
2 2493 bp 52.55 4.23 97.11
13_1_20cm_4_scaffold_232511
Species: Thermoplasmatales archaeon Gpl (50%)
2 1098 bp 48.91 5.26 75.14
13_1_20cm_4_scaffold_241729
Species: Methanoregula formicica (100%)
2 1071 bp 52.19 3.28 100.28
13_1_20cm_4_scaffold_44931
Species: RBG_13_Euryarchaeota_57_23_curated (50%)
2 2286 bp 49.56 7.69 77.30
13_1_20cm_4_scaffold_49309
Species: RBG_16_Euryarchaeota_67_27_curated (50%)
2 2198 bp 52.32 4.34 50.64
13_1_20cm_4_scaffold_228137
Species: RBG_13_Chloroflexi_68_17_curated (50%)
2 1111 bp 50.05 4.52 72.37
Displaying items 401-450 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.