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13_1_40cm_4_scaffold_71119

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_71119_1
unknown

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comp(3..89)
DNA (87bp) protein (29aa)

This feature has no annotations

13_1_40cm_4_scaffold_71119_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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comp(123..518)
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S9
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=14629518 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_4_scaffold_71119_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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comp(515..1036)
DNA (522bp) protein (174aa)
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=14629519 bin=bin8_Chloro species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
50S ribosomal protein L13
13_1_40cm_4_scaffold_71119_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1101..1808)
DNA (708bp) protein (236aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
truA; tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=TRUA_DESAP
13_1_40cm_4_scaffold_71119_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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comp(1826..2356)
DNA (531bp) protein (177aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplQ; putative 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 id=14629521 bin=bin8_Chloro species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
50S ribosomal protein L17
13_1_40cm_4_scaffold_71119_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2360..3397)
DNA (1038bp) protein (346aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4362194 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_4_scaffold_71119_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(3430..4053)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 A n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RS4A_SYMTH
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsD; 30S ribosomal protein S4
13_1_40cm_4_scaffold_71119_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(4107..4616)
DNA (510bp) protein (170aa)
30S ribosomal protein S11 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS11_ROSS1
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S11
13_1_40cm_4_scaffold_71119_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(4616..4999)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=2 Tax=Firmicutes RepID=R6QZ97_9FIRM
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsM; 30S ribosomal protein S13
13_1_40cm_4_scaffold_71119_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(5001..5114)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EWM7_9CYAN
rpmJ, rpl36; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpmJ; 50S ribosomal protein L36
13_1_40cm_4_scaffold_71119_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(5114..5347)
DNA (234bp) protein (78aa)
Translation initiation factor IF-1 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQN5_9FIRM
Translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Translation initiation factor IF-1
13_1_40cm_4_scaffold_71119_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(5443..6219)
DNA (777bp) protein (259aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
map; methionine aminopeptidase (EC:3.4.11.18)
Methionyl aminopeptidase n=1 Tax=uncultured prokaryote RepID=H5S8S7_9ZZZZ
13_1_40cm_4_scaffold_71119_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6230..6796)
DNA (567bp) protein (189aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
adk; adenylate kinase (EC:2.7.4.3)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000381ABF8
13_1_40cm_4_scaffold_71119_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6955..7464)
DNA (510bp) protein (170aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Protein translocase subunit SecY id=4362170 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
preprotein translocase subunit SecY
13_1_40cm_4_scaffold_71119_15
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

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7621..7971
DNA (351bp) protein (117aa)
Tax=RBG_16_RIF_CHLX_69_14_curated
Displaying 15 items

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