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13_1_40cm_4_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_29_1
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

3..2843
DNA (2841bp) protein (947aa)
Putative ATPase (Fragment) n=2 Tax=Mycobacterium paratuberculosis RepID=F7P2S9_MYCPC
hypothetical protein Tax=RBG_16_Chloroflexi_68_14_curated
hypothetical protein
13_1_40cm_4_scaffold_29_2
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(2840..4816)
DNA (1977bp) protein (659aa)
Uncharacterized protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4A1_THERP
hypothetical protein Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
hypothetical protein
13_1_40cm_4_scaffold_29_3
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4816..5367)
DNA (552bp) protein (184aa)
TadE family protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG83_THET1
TadE-like protein {ECO:0000313|EMBL:CEG28321.1}; TaxID=1476857 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B-jedd.;"
TadE family protein
13_1_40cm_4_scaffold_29_4
unknown

Not on your lists

comp(5364..5882)
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_5
unknown

Not on your lists

5973..6737
DNA (765bp) protein (255aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_6
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6745..7689
DNA (945bp) protein (315aa)
Type II secretion system F domain protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QTM3_ACEAZ
type II secretion system F domain protein
Type II secretion system F domain protein {ECO:0000313|EMBL:ADL11787.1}; Flags: Precursor;; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium.;
13_1_40cm_4_scaffold_29_7
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

7697..8587
DNA (891bp) protein (297aa)
Type II secretion system protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NJV2_ROSCS
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:ABU57772.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexu
13_1_40cm_4_scaffold_29_8
RBG_13_OP11_40_15_curated, Microgenomates, Bacteria

Not on your lists

comp(8716..9078)
DNA (363bp) protein (121aa)
Putative transcriptional regulator n=1 Tax=Thermus oshimai JL-2 RepID=K7QY42_THEOS
MerR family transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RBG_13_OP11_40_15_curated
putative transcriptional regulator
13_1_40cm_4_scaffold_29_9
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9127..9534)
DNA (408bp) protein (136aa)
iojap family protein; K09710 ribosome-associated protein Tax=RBG_16_RIF_CHLX_69_14_curated
iojap family protein; K09710 ribosome-associated protein id=14630316 bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
iojap-like protein
13_1_40cm_4_scaffold_29_10
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9515..10123)
DNA (609bp) protein (203aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244};
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAT5_AMMDK
13_1_40cm_4_scaffold_29_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(10120..11220)
DNA (1101bp) protein (367aa)
GTPase involved in cell partioning and DNA repair n=1 Tax=mine drainage metagenome RepID=E6Q7E9_9ZZZZ
GTPase obg; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
GTP-binding protein Obg/CgtA
13_1_40cm_4_scaffold_29_12

Not on your lists


comp(11378..11632)
DNA (255bp) protein (85aa)
Marine sediment metagenome DNA, contig: S06H3_L02860 {ECO:0000313|EMBL:GAI05656.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L25; K02899 large subunit ribosomal protein L27 id=14632396 bin=bin9_gal15 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin9_gal15 organism_group=GAL15
rpmA; Probable 50S ribosomal protein L27
13_1_40cm_4_scaffold_29_13
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(11633..12151)
DNA (519bp) protein (173aa)
50S ribosomal protein L21 (EC:2.3.1.61)
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=CG_Anaero_01
50S ribosomal protein L21 id=2262906 bin=GWB2_Chloroflexi_49_20 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
13_1_40cm_4_scaffold_29_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12138..13250)
DNA (1113bp) protein (371aa)
Rod shape-determining protein RodA n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DWA5_THIND
rod shape-determining protein; K05837 rod shape determining protein RodA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
mrdB_[H]; Rod shape-determining protein RodA
13_1_40cm_4_scaffold_29_15
RBG_13_OD1_Moranbacteria_45_13_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13247..15076)
DNA (1830bp) protein (610aa)
Penicillin-binding protein 2 n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FGU2_DESAA
penicillin-binding protein; K05515 penicillin-binding protein 2 Tax=RBG_13_OD1_Moranbacteria_45_13_curated
penicillin-binding protein 2
13_1_40cm_4_scaffold_29_16
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(15139..15639)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L228_THERP
mreD; rod shape-determining protein MreD; K03571 rod shape-determining protein MreD Tax=CG_Anaero_02
hypothetical protein
13_1_40cm_4_scaffold_29_17
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(15636..16304)
DNA (669bp) protein (223aa)
Cell shape-determining protein MreC n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3J0_ANATU
mreC; rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
mreC; rod shape-determining protein MreC
13_1_40cm_4_scaffold_29_18
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(16456..17514)
DNA (1059bp) protein (353aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=GWC2_RIF_CHLX_73_18_curated
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=14628399 bin=bin8_Chloro species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
rod shape-determining protein MreB
13_1_40cm_4_scaffold_29_19
unknown

Not on your lists

comp(17632..18441)
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_20
unknown

Not on your lists

comp(18438..19523)
DNA (1086bp) protein (362aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_21
unknown

Not on your lists

comp(19513..20052)
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_22
unknown

Not on your lists

comp(20084..21736)
DNA (1653bp) protein (551aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_23
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21758..24310)
DNA (2553bp) protein (851aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valine--tRNA ligase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RL27_MOOTA
13_1_40cm_4_scaffold_29_24
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(24488..25765)
DNA (1278bp) protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX id=14628678 bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=CSP1_4_Chloroflexi
clpX; ATP-dependent protease ATP-binding subunit ClpX
13_1_40cm_4_scaffold_29_25
unknown

Not on your lists

comp(25785..25979)
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_26
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25976..26644)
DNA (669bp) protein (223aa)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=CLPP_PELCD
clpP; ATP-dependent Clp protease, proteolytic subunit ClpP
13_1_40cm_4_scaffold_29_27
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26688..28007)
DNA (1320bp) protein (440aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Thermincola potens (strain JR) RepID=D5XBH2_THEPJ
trigger factor
13_1_40cm_4_scaffold_29_28
R_OP11_Roizmanbacteria_39_12b, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(28039..30228)
DNA (2190bp) protein (730aa)
1A family penicillin-binding protein (EC:2.4.1.129)
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMB6_ROSCS
1A family penicillin-binding protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_12b_curated
13_1_40cm_4_scaffold_29_29
unknown

Not on your lists

comp(30292..30810)
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_29_30
unknown

Not on your lists

comp(30815..31969)
DNA (1155bp) protein (385aa)

This feature has no annotations

Displaying items 1-30 of 39 in total

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