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13_1_40cm_4_scaffold_3443_4

Organism: 13_1_40CM_4_Actinobacteria_65_12

partial RP 17 / 55 MC: 1 BSCG 18 / 51 MC: 1 ASCG 6 / 38
Location: comp(4069..5016)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CY24_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 36.8
  • Coverage: 114.0
  • Bit_score: 63
  • Evalue 3.90e-07
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 36.8
  • Coverage: 114.0
  • Bit_score: 63
  • Evalue 1.20e-07
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain A similarity UNIPROT
DB: UniProtKB
  • Identity: 36.6
  • Coverage: 123.0
  • Bit_score: 60
  • Evalue 4.60e-06

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Taxonomy

Kitasatospora setae → Kitasatospora → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 948
ATGAAAGTCGTGCCACGTGACCGCGGGTATGACATGCAGGACGAACAGGGCCACGACACCACGTTCGCCGAGCATGAGCGCCAGAGTCGCCACCTGCCGCGGGATGCGATGCGATCCTGGTTGGTCAGCGGCATCCACCTGTTCGTCGTCGATCCGCGCCGCCGCTTCGGGGTTCACGGCCGTGCGAAGGAGCTGCTGGTCGTCGATCGACCGGCGAAGCCGGGCGTCTCCGAACGCTGGCAGACGCTGGGGGCGGCGCTTCACAGGCACACGGTTCAGGATGGCATGTCCCAGCTCAGCCCCGAAGAACGACGTGTCCTCACTCTCGCCTACCTTGAAGGCCGCACCAACCACGAAATCGCCGCTATGTTGGGCGTCTCGGTCAGCACCGTTCGGCGGCGGCTGTGGGTTGCTCTCCAGCGTCTTGACGAATACGTCAACCGCACAGGAGCCTGGCTGTCGGCATTCGCCCTGGTGGTCGGGGCGTACGTGGTTAGTCACGCGGACCGGCTCGGACGTTGGGTCGCCACCGCGGTCGGTTCGGCTGAAAAGGCTCAGAGGATGGCCGCGACCCTCGCGGCGGGTGCTGCGACCGTGGCTGTCGTGGGCGTTGTCTCGTTCACCTCGGACTCGGCGATGCAGAGGAAGTTGCCACCTGCTGCGACCGCACGATTGATTCCCCACACAAGGCCGGACGCGCCGCCCTCGGCTCCGAGCGGACCGCAGACGGTGGGGCGGTCGGGGACTCAACCGGGCGGCGTCGTCGCTCCCGGCGACCTCGAGTCCAATGATGGTTCTACGGGTACCTCCTCAACTGGGGGCCACCACAACAACGGCTGCGATGGCAACCCGACCAGCGCGCCGCCACCAGTCCCAGTGGGATCGAAAACGAGCCACCCGACCGGAGCCCCCGTCACGCACCCGACCGCCGGGGGCTGTAAAGGGTAG
PROTEIN sequence
Length: 316
MKVVPRDRGYDMQDEQGHDTTFAEHERQSRHLPRDAMRSWLVSGIHLFVVDPRRRFGVHGRAKELLVVDRPAKPGVSERWQTLGAALHRHTVQDGMSQLSPEERRVLTLAYLEGRTNHEIAAMLGVSVSTVRRRLWVALQRLDEYVNRTGAWLSAFALVVGAYVVSHADRLGRWVATAVGSAEKAQRMAATLAAGAATVAVVGVVSFTSDSAMQRKLPPAATARLIPHTRPDAPPSAPSGPQTVGRSGTQPGGVVAPGDLESNDGSTGTSSTGGHHNNGCDGNPTSAPPPVPVGSKTSHPTGAPVTHPTAGGCKG*