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13_1_40cm_4_scaffold_1254

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1254_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(272..598)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB82_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58576.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_4_scaffold_1254_2
unknown

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759..908
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_40cm_4_scaffold_1254_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1087..1395
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFI5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58575.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_4_scaffold_1254_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1455..1715
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJX4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58572.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera
13_1_40cm_4_scaffold_1254_5
unknown

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1797..1982
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_4_scaffold_1254_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2233..3492)
DNA (1260bp) protein (420aa)
Bacterial type 3a, cellulose-binding domain n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQP9_SORC5
type 3a cellulose-binding domain-containing protein
Bacterial type 3a, cellulose-binding domain {ECO:0000313|EMBL:CAN94167.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;"
13_1_40cm_4_scaffold_1254_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3772..3984)
DNA (213bp) protein (71aa)
Putative signal transduction response regulator, receiver domain protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJQ8_NITGG
signal transduction response regulator, receiver domain-containing protein
Putative signal transduction response regulator, receiver domain protein {ECO:0000313|EMBL:AFU60310.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphae
13_1_40cm_4_scaffold_1254_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4149..4568)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJZ9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82246.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_1_40cm_4_scaffold_1254_9
unknown

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comp(4623..4781)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_1254_10
unknown

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comp(5265..5444)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_4_scaffold_1254_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5441..5692)
DNA (252bp) protein (84aa)
Zinc finger C2H2 domain-containing protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II08_NITGG
zinc finger C2H2 domain-containing protein
Zinc finger C2H2 domain-containing protein {ECO:0000313|EMBL:AFU58568.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" sour
13_1_40cm_4_scaffold_1254_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5726..6583)
DNA (858bp) protein (286aa)
prephenate dehydrogenase (EC:1.3.1.12)
Putative prephenate dehydrogenase {ECO:0000313|EMBL:AFU58567.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AFU58567.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitroso
Putative prephenate dehydrogenase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJX0_NITGG
13_1_40cm_4_scaffold_1254_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6585..7961)
DNA (1377bp) protein (459aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase {ECO:0000313|EMBL:AFU58566.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AFU58566.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaerac
Aspartate aminotransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB67_NITGG
13_1_40cm_4_scaffold_1254_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7967..9076)
DNA (1110bp) protein (370aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH5_NITGG
13_1_40cm_4_scaffold_1254_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9106..10407)
DNA (1302bp) protein (434aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_0
Probable 3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN11_NITGG
13_1_40cm_4_scaffold_1254_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10400..11254)
DNA (855bp) protein (285aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00370}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00370};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00370};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitroso
Shikimate kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHZ8_NITGG
13_1_40cm_4_scaffold_1254_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11251..12030)
DNA (780bp) protein (260aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1237085 species="Archaea; Thaum
Shikimate dehydrogenase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJW7_NITGG
13_1_40cm_4_scaffold_1254_18
unknown

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comp(12102..12332)
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 18 items

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