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13_1_40cm_4_scaffold_3493

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3493_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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3..131
DNA (129bp) protein (43aa)
Site-specific recombinase XerD Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_4_scaffold_3493_2
BJP_IG2103_Methanoregula_55_19, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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135..656
DNA (522bp) protein (174aa)
Tax=BJP_IG2103_Methanoregula_55_19
13_1_40cm_4_scaffold_3493_3
unknown

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comp(719..1693)
DNA (975bp) protein (325aa)

This feature has no annotations

13_1_40cm_4_scaffold_3493_4
unknown

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comp(2017..2469)
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_4_scaffold_3493_5
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2916..4733)
DNA (1818bp) protein (606aa)
Glycoside hydrolase n=2 Tax=Nitrosococcus oceani RepID=Q3JAQ4_NITOC
glycoside hydrolase
Glucoamylase {ECO:0000313|EMBL:KFI19421.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
13_1_40cm_4_scaffold_3493_6
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(5053..5421)
DNA (369bp) protein (123aa)
Transcriptional regulator NikR, CopG family n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T9P7_METSL
CopG family transcriptional regulator
Transcriptional regulator NikR, CopG family {ECO:0000313|EMBL:ADZ09926.1}; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" s
13_1_40cm_4_scaffold_3493_7
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5429..6577
DNA (1149bp) protein (383aa)
ABC-type metal ion transporter, periplasmic subunit n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B4B7_DESCC
heavy metal ABC transporter substrate-binding protein
ABC-type metal ion transporter, periplasmic subunit {ECO:0000313|EMBL:AEF95294.1}; Flags: Precursor;; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotoma
13_1_40cm_4_scaffold_3493_8
Bacillus sonorensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6567..7325
DNA (759bp) protein (253aa)
ycdI; zinc ABC transporter ATP-binding protein YcdI (EC:3.6.3.-)
Zinc ABC transporter ATP-binding protein YcdI n=1 Tax=Bacillus sonorensis L12 RepID=M5P4E0_9BACI
Zinc ABC transporter ATP-binding protein YcdI {ECO:0000313|EMBL:EME74891.1}; TaxID=1274524 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sonorensis L12.
13_1_40cm_4_scaffold_3493_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7312..8136
DNA (825bp) protein (275aa)
putative Zinc uptake transporter, permease protein
Putative Zinc uptake transporter, permease protein {ECO:0000313|EMBL:AIC16364.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.
ATP-binding domain-containing protein; K09816 zinc transport system permease protein id=14427249 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_4_scaffold_3493_10
unknown

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comp(8165..8875)
DNA (711bp) protein (237aa)

This feature has no annotations

13_1_40cm_4_scaffold_3493_11
unknown

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9267..9707
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_40cm_4_scaffold_3493_12
unknown

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9735..10022
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_3493_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(10019..10786)
DNA (768bp) protein (256aa)
ABC-2 type transporter n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8R6Y0_DESM0
ABC transporter Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC transporter
13_1_40cm_4_scaffold_3493_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(10783..11595)
DNA (813bp) protein (271aa)
ABC transporter n=1 Tax=Thermofilum sp. 1910b RepID=S5ZX03_9CREN
ABC transporter Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC transporter
13_1_40cm_4_scaffold_3493_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11558..12493)
DNA (936bp) protein (312aa)
ABC transporter related protein n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TE38_THEC1
ABC transporter Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC transporter
13_1_40cm_4_scaffold_3493_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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12623..13195
DNA (573bp) protein (191aa)
Nitroreductase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5J2_SPHTD
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ACZ37508.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaer
13_1_40cm_4_scaffold_3493_17

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comp(13250..14005)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N23 RepID=UPI0003652F02
Uncharacterized protein {ECO:0000313|EMBL:KHO48411.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
threonyl/alanyl tRNA synthetase SAD
13_1_40cm_4_scaffold_3493_18

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comp(14023..14190)
DNA (168bp) protein (56aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-); K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-]
Uncharacterized protein {ECO:0000313|EMBL:KKK57677.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_4_scaffold_3493_19
R_OP3X_45_16, OP3X, Bacteria

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comp(14193..14807)
DNA (615bp) protein (205aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-); K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-] id=14427810 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
lsrF; putative aldolase LsrF (EC:4.1.2.-)
fructose-bisphosphate aldolase Tax=RIFCSPLOWO2_02_FULL_OP3X_45_16_curated
13_1_40cm_4_scaffold_3493_20
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15050..15883
DNA (834bp) protein (278aa)
Haloalkane dehalogenase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJP3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJS39297.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_3493_21
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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15970..16452
DNA (483bp) protein (161aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ADR20768.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ADR20768.1};; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgace
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TS17_MARTH
Displaying 21 items

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