ggKbase home page

13_1_40cm_4_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_80_1
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

3..476
DNA (474bp) protein (158aa)
Putative NurA domain-containing protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFU9_NITGG
NurA domain-containing protein Tax=RBG_13_Bathyarchaeota_38_9_curated
NurA domain-containing protein
13_1_40cm_4_scaffold_80_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

479..1906
DNA (1428bp) protein (476aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
DUF87 domain-containing protein id=2756267 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
putative ATPase
13_1_40cm_4_scaffold_80_3
unknown

Not on your lists

1964..2365
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_4
unknown

Not on your lists

2405..2989
DNA (585bp) protein (195aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_5
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

3166..4128
DNA (963bp) protein (321aa)
Marine sediment metagenome DNA, contig: S06H3_C02025 Tax=RBG_16_Chloroflexi_68_14_curated
13_1_40cm_4_scaffold_80_6
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(4634..5176)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH1_NITGG
Ig family protein Tax=RBG_16_Chloroflexi_48_8_curated
putative cell surface uncharacterized protein related to type IV pili
13_1_40cm_4_scaffold_80_7
Pyrococcus horikoshii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(5267..5905)
DNA (639bp) protein (213aa)
Putative uncharacterized protein PH1152 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58882_PYRHO
Putative uncharacterized protein PH1152 {ECO:0000313|EMBL:BAA30252.1}; TaxID=70601 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus horik
traB; pheromone shutdown protein (traB)
13_1_40cm_4_scaffold_80_8
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

5986..6822
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABT4_IGNH4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU82386.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (s
13_1_40cm_4_scaffold_80_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

6819..7622
DNA (804bp) protein (268aa)
Pnp; purine nucleoside phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RBG_16_Archaea_50_20_curated
methylthioadenosine phosphorylase (EC:2.4.2.28)
Probable S-methyl-5'-thioinosine phosphorylase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T9Y4_METSL
13_1_40cm_4_scaffold_80_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7619..8401
DNA (783bp) protein (261aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] Tax=RBG_16_Archaea_50_20_curated
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
hypothetical protein n=3 Tax=unclassified Crenarchaeota RepID=UPI00038014D5
13_1_40cm_4_scaffold_80_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8480..12019
DNA (3540bp) protein (1180aa)
Chromosome segregation ATPase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TB52_9ARCH
chromosome segregation protein smc1; K03529 chromosome segregation protein Tax=RBG_16_Archaea_50_20_curated
chromosome segregation ATPase
13_1_40cm_4_scaffold_80_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

12061..12693
DNA (633bp) protein (211aa)
Condensin subunit ScpA n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TVH0_9ARCH
segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RBG_16_Archaea_50_20_curated
segregation and condensation protein A
13_1_40cm_4_scaffold_80_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

12671..13270
DNA (600bp) protein (200aa)
Transcriptional regulator containing HTH domain n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RXG4_CENSY
putative transcriptional regulator; K06024 segregation and condensation protein B Tax=RBG_16_Archaea_50_20_curated
transcriptional regulator containing HTH domain
13_1_40cm_4_scaffold_80_14
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13387..14163
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG5X2-1 RepID=J8BK27_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EJQ51985.1}; TaxID=1053191 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG5X2-
type 11 methyltransferase
13_1_40cm_4_scaffold_80_15
unknown

Not on your lists

comp(14190..14351)
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_16
unknown

Not on your lists

comp(14391..14591)
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_17
unknown

Not on your lists

14758..15681
DNA (924bp) protein (308aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_18
unknown

Not on your lists

15734..16174
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_19
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

comp(16282..17343)
DNA (1062bp) protein (354aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI000379DD81
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:BAJ46630.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candi
13_1_40cm_4_scaffold_80_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17997..18974)
DNA (978bp) protein (326aa)
PREDICTED: serine racemase-like isoform X3 n=1 Tax=Aplysia californica RepID=UPI0003593F8F
Pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG92280.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_80_21
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(19005..20003)
DNA (999bp) protein (333aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.- {ECO:0000256|HAM
hypothetical protein n=2 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00037DA33D
glycine hydroxymethyltransferase
13_1_40cm_4_scaffold_80_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(20161..20574)
DNA (414bp) protein (138aa)
30S ribosomal protein S11 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS11_METKA
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Archaea_50_20_curated
rps11p; 30S ribosomal protein S11
13_1_40cm_4_scaffold_80_23
unknown

Not on your lists

20658..20924
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20924..23293
DNA (2370bp) protein (790aa)
DNA polymerase Pol2; K02319 DNA polymerase I [EC:2.7.7.7] Tax=RBG_16_Archaea_50_20_curated
DNA polymerase n=1 Tax=Thermofilum sp. 1910b RepID=S5Z6M3_9CREN
DNA polymerase
13_1_40cm_4_scaffold_80_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23270..24547)
DNA (1278bp) protein (426aa)
DNA primase DnaG n=1 Tax=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) RepID=DNAG_PYRFU
DNA primase Tax=RBG_16_Archaea_50_20_curated
DNA primase
13_1_40cm_4_scaffold_80_26
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

24817..25224
DNA (408bp) protein (136aa)
hypothetical protein Tax=RBG_16_Zixibacteria_53_22_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=7718574 bin=BACIGN_2 species=Gordonia rhizosphera genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=BACIGN_2 organism_group=Unknown_CP
Glyoxalase-like domain protein
13_1_40cm_4_scaffold_80_27
unknown

Not on your lists

comp(25342..26346)
DNA (1005bp) protein (335aa)

This feature has no annotations

13_1_40cm_4_scaffold_80_28
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26568..27605
DNA (1038bp) protein (346aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59); K00150 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) [EC:1.2.1.59] Tax=CG_Solirubrobact_01
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59)
Glyceraldehyde-3-phosphate dehydrogenase, type II n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0H8_DEHLB
13_1_40cm_4_scaffold_80_29
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

27708..28148
DNA (441bp) protein (147aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J0F3_FRASU
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RBG_16_Chloroflexi_56_8_curated
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
13_1_40cm_4_scaffold_80_30
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(28208..29539)
DNA (1332bp) protein (444aa)
Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ54_ARCVS
hypothetical protein containing KaiC-domain Tax=RBG_13_Bathyarchaeota_38_9_curated
circadian clock protein KaiC
Displaying items 1-30 of 49 in total

View Taxonomy