ggKbase home page

13_1_40cm_4_scaffold_14198

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_14198_1
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(1..1224)
DNA (1224bp) protein (408aa)
sodium/hydrogen exchanger family/TrkA domain protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=CG_Nitrosp_02
Sodium/hydrogen exchanger family/TrkA domain protein id=2311514 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
sodium/hydrogen exchanger
13_1_40cm_4_scaffold_14198_2
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

1264..2136
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035CE211
transporter, MscS family Tax=CG_OP9-01
mechanosensitive ion channel protein MscS
13_1_40cm_4_scaffold_14198_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(2133..3518)
DNA (1386bp) protein (462aa)
aromatic-L-amino-acid decarboxylase
Aromatic-L-amino-acid decarboxylase {ECO:0000313|EMBL:AIE84362.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbrii
Aromatic-L-amino-acid decarboxylase id=2122836 bin=GWB2_Chloroflexi_54_36 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
13_1_40cm_4_scaffold_14198_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3574..3924)
DNA (351bp) protein (117aa)
ycdJ; arylesterase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
antibiotic biosynthesis monooxygenase id=1245775 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
antibiotic biosynthesis monooxygenase
13_1_40cm_4_scaffold_14198_5
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3890..4255)
DNA (366bp) protein (122aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7VC87_9DELT
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EPR44289.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" so
conserved protein of unknown function
13_1_40cm_4_scaffold_14198_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4308..5279)
DNA (972bp) protein (324aa)
DMT superfamily drug/metabolite permease Tax=RBG_16_Deltaproteobacteria_54_11_curated
protein of unknown function DUF6 transmembrane
ial:IALB_2604 DMT superfamily drug/metabolite permease id=719043 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
13_1_40cm_4_scaffold_14198_7
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5279..5758)
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P479_9BACT
AsnC family transcriptional regulator {ECO:0000313|EMBL:KEI44925.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspor
AsnC family transcriptional regulator
13_1_40cm_4_scaffold_14198_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5887..6678
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SUC4_9BACT
Conserved hypothetical protein CHP00268
Uncharacterized protein {ECO:0000313|EMBL:AHG90451.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_14198_9

Not on your lists

6783..7241
DNA (459bp) protein (153aa)
2'-5' RNA ligase n=1 Tax=uncultured prokaryote RepID=H5SIR3_9ZZZZ
2'-5' RNA ligase {ECO:0000313|EMBL:BAL56049.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
2'-5' RNA ligase
13_1_40cm_4_scaffold_14198_10
unknown

Not on your lists

7225..7890
DNA (666bp) protein (222aa)

This feature has no annotations

13_1_40cm_4_scaffold_14198_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7887..8798
DNA (912bp) protein (304aa)
Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7J8_GEMAT
putative NtrC family two-component response regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative NtrC family two-component response regulator
Displaying 11 items

View Taxonomy