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This organism can only be binned in the context of its binning project GWA1. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

13_1_40cm_4_scaffold_1788

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1788_1
unknown

Not on your lists

1..183
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_2
unknown

Not on your lists

449..1930
-----------------
DNA (1482bp)
protein (494aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_3
unknown

Not on your lists

comp(2145..2618)
-----------------
DNA (474bp)
protein (158aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_4
unknown

Not on your lists

comp(2835..3353)
-----------------
DNA (519bp)
protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_5
unknown

Not on your lists

comp(3344..3766)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_6
unknown

Not on your lists

4018..4542
-----------------
DNA (525bp)
protein (175aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_7
unknown

Not on your lists

4542..4742
-----------------
DNA (201bp)
protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_8
unknown

Not on your lists

comp(4793..5047)
-----------------
DNA (255bp)
protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_9
unknown

Not on your lists

5143..5538
-----------------
DNA (396bp)
protein (132aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_10
Enhydrobacter aerosaccus, Enhydrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5522..6232
-----------------
DNA (711bp)
protein (237aa)
Glycosyltransferase, group 2 family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVC3_9GAMM
Glycosyltransferase, group 2 family {ECO:0000313|EMBL:EEV23687.1}; TaxID=553217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Enhydrobacter.;" source="Enhydro
uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain
13_1_40cm_4_scaffold_1788_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6291..7601
-----------------
DNA (1311bp)
protein (437aa)
Protein phosphatase 2C n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EK24_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EYR67550.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
hypothetical protein
13_1_40cm_4_scaffold_1788_12
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7636..9099
-----------------
DNA (1464bp)
protein (488aa)
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SNI9_HAHCH
protein kinase/helix-hairpin-helix DNA-binding domain-containing proteins
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains {ECO:0000313|EMBL:ABC27785.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospiril
13_1_40cm_4_scaffold_1788_13
Hyphomonas hirschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9164..9910
-----------------
DNA (747bp)
protein (249aa)
Putative localization factor protein PodJ n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C4E8_HYPNA
putative localization factor protein PodJ
Putative localization factor protein PodJ {ECO:0000313|EMBL:KCZ96393.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="H
13_1_40cm_4_scaffold_1788_14
unknown

Not on your lists

9885..11036
-----------------
DNA (1152bp)
protein (384aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_15
unknown

Not on your lists

11033..12091
-----------------
DNA (1059bp)
protein (353aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_16
unknown

Not on your lists

comp(12169..12675)
-----------------
DNA (507bp)
protein (169aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_17
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

12888..13484
-----------------
DNA (597bp)
protein (199aa)
Tax=RBG_16_Nitrospirae_43_8_curated
13_1_40cm_4_scaffold_1788_18

Not on your lists

13571..13915
-----------------
DNA (345bp)
protein (115aa)
Marine sediment metagenome DNA, contig: S06H3_S07871 {ECO:0000313|EMBL:GAI19826.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
13_1_40cm_4_scaffold_1788_19
unknown

Not on your lists

14028..14426
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_20
unknown

Not on your lists

14426..14680
-----------------
DNA (255bp)
protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_21
Cyanobium gracile, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

14926..15270
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P6Y4_CYAGP
Uncharacterized protein {ECO:0000313|EMBL:AFY29167.1}; TaxID=292564 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium gracile (strain ATCC 27147 /
hypothetical protein
13_1_40cm_4_scaffold_1788_22
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15459..16676
-----------------
DNA (1218bp)
protein (406aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9J7_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJH65670.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium vio
13_1_40cm_4_scaffold_1788_23
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

16685..17848
-----------------
DNA (1164bp)
protein (388aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AAA0_CARHZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB14117.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothe
13_1_40cm_4_scaffold_1788_24
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

17851..18441
-----------------
DNA (591bp)
protein (197aa)
Conserved domain protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AA99_CARHZ
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABB16033.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydoth
13_1_40cm_4_scaffold_1788_25
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18441..19868
-----------------
DNA (1428bp)
protein (476aa)
Conserved domain protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AA99_CARHZ
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABB16033.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydoth
13_1_40cm_4_scaffold_1788_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19899..21368
-----------------
DNA (1470bp)
protein (490aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JFQ7_ANAD2 id=5223517 bin=16ft_combo_ws3_JS1 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_1788_27
unknown

Not on your lists

comp(21293..21451)
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_1788_28
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21464..21862)
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B6M3_TURPD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_4_scaffold_1788_29
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

21947..22072
-----------------
DNA (126bp)
protein (42aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_1788_trna_1
unknown

Not on your lists

comp(22268..22351)
-----------------
DNA (84bp)
transferRNA
Displaying items 1-30 of 32 in total

View Taxonomy