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13_1_40cm_4_scaffold_7890

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7890_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3..443
DNA (441bp) protein (147aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A499_GEMAT
13_1_40cm_4_scaffold_7890_2
unknown

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628..1344
DNA (717bp) protein (239aa)

This feature has no annotations

13_1_40cm_4_scaffold_7890_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1387..2634
DNA (1248bp) protein (416aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC49396.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
transmembrane_regions 9..31 id=124906 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
13_1_40cm_4_scaffold_7890_4
unknown

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2634..3125
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_4_scaffold_7890_5

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4007..4597
DNA (591bp) protein (197aa)
Marine sediment metagenome DNA, contig: S01H1_S15614 {ECO:0000313|EMBL:GAG21237.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_1_40cm_4_scaffold_7890_6

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4622..4984
DNA (363bp) protein (121aa)
Marine sediment metagenome DNA, contig: S06H3_S07871 {ECO:0000313|EMBL:GAI19826.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
13_1_40cm_4_scaffold_7890_7
unknown

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5034..5498
DNA (465bp) protein (155aa)

This feature has no annotations

13_1_40cm_4_scaffold_7890_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5587..6198
DNA (612bp) protein (204aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A498_GEMAT
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RBG_16_Gemmatimonadetes_66_8_curated
Redox-sensing transcriptional repressor rex
13_1_40cm_4_scaffold_7890_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6210..7442
DNA (1233bp) protein (411aa)
arginine deiminase; K01478 arginine deiminase [EC:3.5.3.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00037C55B5
arginine deiminase
13_1_40cm_4_scaffold_7890_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7541..8239
DNA (699bp) protein (233aa)
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7)
DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A497_GEMAT
13_1_40cm_4_scaffold_7890_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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8218..9078
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A496_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
13_1_40cm_4_scaffold_7890_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9312..9773
DNA (462bp) protein (154aa)
Translation initiation factor IF-3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A495_GEMAT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
infC; translation initiation factor IF-3
13_1_40cm_4_scaffold_7890_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9809..10000
DNA (192bp) protein (64aa)
50S ribosomal protein L35 n=2 Tax=Clostridiales RepID=E0QH50_9FIRM
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L35
13_1_40cm_4_scaffold_7890_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10011..10364
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL20_GEMAT
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplT; 50S ribosomal protein L20
13_1_40cm_4_scaffold_7890_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10367..11032
DNA (666bp) protein (222aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phenylalanyl-tRNA synthase subunit alpha n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B3F6A5
phenylalanyl-tRNA synthetase subunit alpha
Displaying 15 items

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