ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

13_1_40cm_4_scaffold_2193_13

Organism: 13_1_40CM_4_Gemmatimonadetes_65_7

partial RP 19 / 55 MC: 6 BSCG 17 / 51 MC: 4 ASCG 7 / 38 MC: 2
Location: comp(11105..12547)

Top 3 Functional Annotations

Value Algorithm Source
Secreted protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ81_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 48.1
  • Coverage: 478.0
  • Bit_score: 428
  • Evalue 1.20e-116
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 48.5
  • Coverage: 466.0
  • Bit_score: 475
  • Evalue 7.00e-131
periplasmic component of the Tol biopolymer transport system similarity KEGG
DB: KEGG
  • Identity: 46.7
  • Coverage: 480.0
  • Bit_score: 418
  • Evalue 3.50e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Gammaproteobacteria_61_13 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1443
ATGGATGCCCAGCGTCAAGGCGTCTTCAAACAAGTCGATCTGCCGCATCCCTATTACTGGCGCGAGATGTACGTCCCGCAGGTGACGAGCGGGCCAAGCGCCGTGACGTGGTCACCAGATGGATCGGCGCTCATCTACTCGATGCAAGGGTCGCTCTGGCGCCAGCGAATCGGCTCGGATTCCGCAGAGCAGCTGACGTCGGGACCCGGATACGATTACCAGCCCGATTGGTCGCCGGACGGAAAGTTGATCGTCTTCGCTCGCTACGCACATGACGCGATCGAGCTCGAACGGCTCGACTTGGCGTCGGGGACCGTCACGCCGCTGACGGCGAATGCCGCGGTGAACGTCGAGCCGCGCTGGTCTCCTGATGGGACGCGGATCGTCTTCGTGTCCTCGGTCTACAATCGTCGCTGGCACATCTTCGTCCTGAGCCCCGAAGGGGCGAAGGATCCGCTGCGGCTCACCGACGACAATGACAGCAGACTGCCGCGCTACTACTACAGCCCGTGGGACCACTACATCTCGCCGACATGGTCGTCCGACGGCAAAGAAATCATTCTCGTCTCAAACCGCGGGCACATTCACGGCAGCGGCGGCTTCTGGCGCATGGAGGCGCGCCCCGGCGCCCCGCTGCGCGAGCTGCGCTACGAAGAAACGACCTGGAAGGCTCGGCCAGATTGGTCGCCCGATGGCAAGCGAGTCGTTTACAGCTCCTACCTCGGCCGACAGTGGAATCAACTGTGGCTGATGACGAGCGAGGGCGGCGATCCATTTCCTCTCACCTATGGCGAGTTCGACGCGACCGCGCCGCGCTGGTCGCACGACGGCAAGCACGTTGCTTACGTCTCCAACGAGGGCGGCAATACGTCGCTGTGGGTCATCGATGTGCCGGGCGGCAAGAAGCGGCGGGTCGAAGCGCGTCAACGGCATTATCGCGGGACGGTGGGGACGCTGCGAATCGATGTCGTCGATCGGAGCGGACGAGCGATCGCGGCGCGGCTGTCCGTGACAGCTGAGGACGGCCGTGGGTACGCGCCGGACGACGCGTGGCGGCATGCGGATGAGGCGTTCGACCGGACCGAGCGGCCGTACGAGTACGCCTACTTCCATTCAGCCGGTCGCGTGGTCGTGACCGTGCCGGCGGGGCGGCTGCACATCGAGGCGTGGCGTGGGCCCGAGTATCGGATGGCGCGCGTGGATGTGAACATGCCGGCCGGCGGCCGTCTGGTTCGTCGCATCGTCCTCGAACGGCTCGACAACCTTCCAGCCCGAGCGTGGTGGAGCGGTGACGTACACGTGCACATGAATTACGGCGGCGCCTATCGCAACACGCCTCGGCACCTCGCGTTGCAAGCGAAGGCGGAAGAGAGCAACGAATTCCCGACATCGATTATTTCCGCACGGACGCAGATCCCGTCTCAGCGCCGGACTTCCTGCTGA
PROTEIN sequence
Length: 481
MDAQRQGVFKQVDLPHPYYWREMYVPQVTSGPSAVTWSPDGSALIYSMQGSLWRQRIGSDSAEQLTSGPGYDYQPDWSPDGKLIVFARYAHDAIELERLDLASGTVTPLTANAAVNVEPRWSPDGTRIVFVSSVYNRRWHIFVLSPEGAKDPLRLTDDNDSRLPRYYYSPWDHYISPTWSSDGKEIILVSNRGHIHGSGGFWRMEARPGAPLRELRYEETTWKARPDWSPDGKRVVYSSYLGRQWNQLWLMTSEGGDPFPLTYGEFDATAPRWSHDGKHVAYVSNEGGNTSLWVIDVPGGKKRRVEARQRHYRGTVGTLRIDVVDRSGRAIAARLSVTAEDGRGYAPDDAWRHADEAFDRTERPYEYAYFHSAGRVVVTVPAGRLHIEAWRGPEYRMARVDVNMPAGGRLVRRIVLERLDNLPARAWWSGDVHVHMNYGGAYRNTPRHLALQAKAEESNEFPTSIISARTQIPSQRRTSC*