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13_1_40cm_4_scaffold_1113

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1113_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..165)
DNA (165bp) protein (55aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4189570 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces viridochromogenes genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1113_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(162..1484)
DNA (1323bp) protein (441aa)
hemL; glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (EC:5.4.3.8) Tax=GWC2_Rokubacteria_70_16_curated
hemL; glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) id=4189569 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1113_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1481..2410)
DNA (930bp) protein (310aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aspartate/glutamate/hydantoin racemase (Fragment) id=4189568 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aspartate/glutamate/hydantoin racemase
13_1_40cm_4_scaffold_1113_4
unknown

Not on your lists

2823..3122
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_4_scaffold_1113_5
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

3281..4162
DNA (882bp) protein (294aa)
hypothetical protein Tax=RBG_16_Chloroflexi_68_14_curated
hypothetical protein id=2206030 bin=GWB2_Pelobacter_53_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
13_1_40cm_4_scaffold_1113_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4159..5871
DNA (1713bp) protein (571aa)
putative alpha-amylase (EC:3.2.1.1) Tax=GWA2_Rokubacteria_73_35_curated
putative alpha-amylase (EC:3.2.1.1)
Glycoside hydrolase family 57 id=3927648 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1113_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5877..7118
DNA (1242bp) protein (414aa)
ADP-glucose pyrophosphorylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glucose-1-phosphate adenylyltransferase id=3927644 bin=GWA2_Methylomirabilis_73_35 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleotidyl transferase
13_1_40cm_4_scaffold_1113_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7115..9496
DNA (2382bp) protein (794aa)
glycoside hydrolase Tax=GWA2_Rokubacteria_73_35_curated
Glycoside hydrolase family 57 id=3927642 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycoside hydrolase family protein
13_1_40cm_4_scaffold_1113_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9508..11442
DNA (1935bp) protein (645aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase id=4667512 bin=GWF2_Methylomirabilis_70_14 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1113_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11433..11960)
DNA (528bp) protein (176aa)
hypothetical protein id=3927638 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1113_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12061..13656)
DNA (1596bp) protein (532aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3927636 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1113_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13661..14704)
DNA (1044bp) protein (348aa)
AIR synthase-like protein Tax=GWA2_Rokubacteria_73_35_curated
AIR synthase-like protein id=14626878 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AIR synthase-like protein domain-containing protein
13_1_40cm_4_scaffold_1113_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14739..15656
DNA (918bp) protein (306aa)
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glutamate formiminotransferase (EC:2.1.2.5)
Glutamate formiminotransferase id=3927630 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1113_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15714..16595)
DNA (882bp) protein (294aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3927628 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1113_15
unknown

Not on your lists

comp(16592..16684)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_1113_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16674..18914)
DNA (2241bp) protein (747aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cu(2+)-binding/translocating P-type ATPase id=3927624 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heavy metal translocating P-type ATPase
13_1_40cm_4_scaffold_1113_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18914..19195)
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3927621 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1113_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19297..19674)
DNA (378bp) protein (126aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3927613 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1113_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19671..21230)
DNA (1560bp) protein (520aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] id=14626887 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease
13_1_40cm_4_scaffold_1113_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21285..22376)
DNA (1092bp) protein (364aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rod shape-determining protein RodA id=3227259 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein RodA
13_1_40cm_4_scaffold_1113_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22376..24181)
DNA (1806bp) protein (602aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_1_40cm_4_scaffold_1113_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24192..24680)
DNA (489bp) protein (163aa)
hypothetical protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1113_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24680..24919)
DNA (240bp) protein (80aa)
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative cell shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=GWA2_Rokubacteria_73_35_curated
rod shape-determining protein MreC
13_1_40cm_4_scaffold_1113_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25494..26525)
DNA (1032bp) protein (344aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell shape determining protein, MreB/Mrl family id=3227267 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein MreB
13_1_40cm_4_scaffold_1113_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

26942..27973
DNA (1032bp) protein (344aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiol-disulfide oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_1113_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28178..28381
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=14627158 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cold-shock DNA-binding domain-containing protein
13_1_40cm_4_scaffold_1113_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28457..29587
DNA (1131bp) protein (377aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=GWA2_Rokubacteria_73_35_curated
DEAD/DEAH box helicase domain protein id=2197702 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DEAD/DEAH box helicase
13_1_40cm_4_scaffold_1113_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30027..30344)
DNA (318bp) protein (106aa)
helix-hairpin-helix repeat-containing competence protein ComEA; K02237 competence protein ComEA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence protein ComEA helix-hairpin-helix repeat protein id=2197704 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
helix-hairpin-helix repeat-containing competence protein ComEA
13_1_40cm_4_scaffold_1113_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30476..30781)
DNA (306bp) protein (102aa)
HNH endonuclease family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HNH endonuclease family protein id=2197705 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease
13_1_40cm_4_scaffold_1113_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30774..31892)
DNA (1119bp) protein (373aa)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein
Displaying items 1-30 of 49 in total

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