ggKbase home page

13_1_40cm_4_scaffold_12327

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_12327_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..1077)
DNA (1044bp) protein (348aa)
Possible streptogramin lyase, gluconolactonase family protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6Z1T3_9ALTE
lyase -like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
lyase -like protein
13_1_40cm_4_scaffold_12327_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1762..3285)
DNA (1524bp) protein (508aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_4_scaffold_12327_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3352..4185
DNA (834bp) protein (278aa)
extradiol ring-cleavage dioxygenase class III protein subunit B; K05713 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Extradiol ring-cleavage dioxygenase class III protein subunit B id=4911279 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
13_1_40cm_4_scaffold_12327_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4182..4397
DNA (216bp) protein (72aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4911278 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_12327_5
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(4441..5229)
DNA (789bp) protein (263aa)
Aquaporin-4 n=1 Tax=Crassostrea gigas RepID=K1QC31_CRAGI
hypothetical protein Tax=RBG_16_Chloroflexi_64_32_curated
MIP family channel protein
13_1_40cm_4_scaffold_12327_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5363..5980)
DNA (618bp) protein (206aa)
Putative uncharacterized protein id=4695034 bin=GWC2_Methylomirabilis_70_16 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_12327_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6314..7912
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QH54_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_4_scaffold_12327_8
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(8096..8938)
DNA (843bp) protein (281aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
OmpA/MotB domain protein id=3338598 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_4_scaffold_12327_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9103..10296)
DNA (1194bp) protein (398aa)
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Arabinose efflux permease family protein id=4221600 bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily transporter
13_1_40cm_4_scaffold_12327_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10463..11062
DNA (600bp) protein (200aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4221598 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 10 items

View Taxonomy