ggKbase home page

13_1_40cm_4_scaffold_12038

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_12038_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..297
DNA (297bp) protein (99aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic
13_1_40cm_4_scaffold_12038_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(299..1528)
DNA (1230bp) protein (410aa)
biotin carboxylase-like Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
biotin carboxylase-like id=14626151 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
13_1_40cm_4_scaffold_12038_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1572..1853)
DNA (282bp) protein (94aa)
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Nitrogen fixation protein NifU id=4012736 bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen-fixing NifU domain-containing protein
13_1_40cm_4_scaffold_12038_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1925..3391)
DNA (1467bp) protein (489aa)
Radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=4817720 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Radical SAM domain-containing protein
13_1_40cm_4_scaffold_12038_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3408..3614
DNA (207bp) protein (69aa)
Zinc finger, CDGSH-type id=14625183 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
iron-binding zinc finger protein, CDGSH type
13_1_40cm_4_scaffold_12038_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3630..3917)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4539026 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_12038_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4744..4869
DNA (126bp) protein (42aa)
dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Dipeptide transport system permease protein DppB id=4539024 bin=GWA2_Methylomirabilis_73_35 species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_12038_8
unknown

Not on your lists

comp(5111..5266)
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_4_scaffold_12038_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5389..5661
DNA (273bp) protein (91aa)
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative peptide ABC transporter permease protein id=4539023 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_12038_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5704..6042)
DNA (339bp) protein (113aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 10 items

View Taxonomy