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13_1_40cm_4_scaffold_1620

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1620_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

120..713
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical membrane protein id=3950581 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_1620_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(836..1738)
DNA (903bp) protein (301aa)
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14627053 bin=bin7_NC10_sister species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transporters inner membrane component
13_1_40cm_4_scaffold_1620_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1925..2842)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
dppB; dipeptide transport system permease DppB
13_1_40cm_4_scaffold_1620_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2839..4314)
DNA (1476bp) protein (492aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=GWC2_Rokubacteria_70_16_curated
RNA methyltransferase id=3820160 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA methyltransferase
13_1_40cm_4_scaffold_1620_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4367..4837
DNA (471bp) protein (157aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4526375 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1620_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4834..6579
DNA (1746bp) protein (582aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1620_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6596..7312
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1620_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7328..8245
DNA (918bp) protein (306aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=3716360 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
13_1_40cm_4_scaffold_1620_trna_1
unknown

Not on your lists

8260..8338
DNA (79bp)
transferRNA
13_1_40cm_4_scaffold_1620_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8354..9292
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1620_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


9315..10031
DNA (717bp) protein (239aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
13_1_40cm_4_scaffold_1620_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10047..10571
DNA (525bp) protein (175aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1620_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10591..10971)
DNA (381bp) protein (127aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Na+ antiporter
13_1_40cm_4_scaffold_1620_13
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

11337..11558
DNA (222bp) protein (74aa)
id=12550386 Tax=RBG_16_Planctomycetes_59_8_curated
13_1_40cm_4_scaffold_1620_14
unknown

Not on your lists

11577..11768
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_1620_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11925..12119
DNA (195bp) protein (65aa)
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21
13_1_40cm_4_scaffold_1620_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12209..14650
DNA (2442bp) protein (814aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MutS2 protein
13_1_40cm_4_scaffold_1620_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14653..16527
DNA (1875bp) protein (625aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
13_1_40cm_4_scaffold_1620_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16520..18370
DNA (1851bp) protein (617aa)
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=GWC2_Rokubacteria_70_16_curated
RNA polymerase sigma factor RpoD
13_1_40cm_4_scaffold_1620_trna_2
unknown

Not on your lists

18390..18461
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_1620_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18646..19359
DNA (714bp) protein (238aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_1620_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19521..19820
DNA (300bp) protein (100aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4] Tax=GWC2_Rokubacteria_70_16_curated
Ribonuclease H id=4704588 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease H
13_1_40cm_4_scaffold_1620_21
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19832..20776
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003669DC0
ECF subfamily RNA polymerase sigma-24 factor
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:AJY76664.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus b
13_1_40cm_4_scaffold_1620_22
unknown

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21607..21666
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 24 items

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