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13_1_40cm_4_scaffold_1692

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1692_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..978)
DNA (978bp) protein (326aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_1692_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1123..2130)
DNA (1008bp) protein (336aa)
ABC-type transporter, integral membrane subunit id=2654099 bin=GWC2_Methylomirabilis_70_24 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
amino acid ABC transporter Tax=GWA2_Rokubacteria_70_23_curated
amino acid/amide ABC transporter membrane protein 2, HAAT family
13_1_40cm_4_scaffold_1692_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2127..2987)
DNA (861bp) protein (287aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family id=4547724 bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=GWA2_Rokubacteria_70_23_curated
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_4_scaffold_1692_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2984..3985)
DNA (1002bp) protein (334aa)
aminocarboxymuconate-semialdehyde decarboxylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative TIM-barrel fold metal-dependent hydrolase id=3830378 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aminocarboxymuconate-semialdehyde decarboxylase
13_1_40cm_4_scaffold_1692_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4048..5007
DNA (960bp) protein (320aa)
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1692_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5004..6950)
DNA (1947bp) protein (649aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=4400775 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1692_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6960..7916)
DNA (957bp) protein (319aa)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3830373 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
13_1_40cm_4_scaffold_1692_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7919..8998)
DNA (1080bp) protein (360aa)
serine--pyruvate transaminase (EC:2.6.1.51) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aminotransferase (EC:2.6.1.-)
Serine--pyruvate transaminase id=3830371 bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1692_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9617..9970)
DNA (354bp) protein (118aa)
transcriptional regulator y4dJ Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_4_scaffold_1692_10
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10324..10632)
DNA (309bp) protein (103aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAU4_SINAD
dioxygenase, ferredoxin subunit Tax=RBG_13_Deltaproteobacteria_65_10_curated
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
13_1_40cm_4_scaffold_1692_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10632..10814)
DNA (183bp) protein (61aa)
DSBA-like thioredoxin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_1692_12
unknown

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comp(11079..11276)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_4_scaffold_1692_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11307..11762
DNA (456bp) protein (152aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1692_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11776..12543)
DNA (768bp) protein (256aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627875 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1692_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12675..13316
DNA (642bp) protein (214aa)
hypothetical protein; K07147 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin binding protein id=3831000 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1692_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13361..14038
DNA (678bp) protein (226aa)
Heavy metal response regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PA26_9BACT
cztR; heavy metal response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cztR; heavy metal response regulator
13_1_40cm_4_scaffold_1692_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14050..15447
DNA (1398bp) protein (466aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT7_SYNFM
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_1692_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15545..16264
DNA (720bp) protein (240aa)
TPR repeats containing protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I5V3_METCZ
TPR repeats containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1692_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16261..17658
DNA (1398bp) protein (466aa)
Serine protease do-like (EC:3.4.21.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Serine protease do-like (EC:3.4.21.-)
Putative Serine protease do-like n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR6_9BACT
13_1_40cm_4_scaffold_1692_20
unknown

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17715..17828
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_4_scaffold_1692_21
unknown

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17837..18640
DNA (804bp) protein (268aa)

This feature has no annotations

13_1_40cm_4_scaffold_1692_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18669..19787)
DNA (1119bp) protein (373aa)
major facilitator superfamily protein Tax=GWA2_Rokubacteria_70_23_curated
Major facilitator superfamily MFS_1 id=3831007 bin=GWF2_Methylomirabilis_70_14 species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arabinose efflux permease family protein
13_1_40cm_4_scaffold_1692_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19784..20587)
DNA (804bp) protein (268aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alpha/beta hydrolase fold protein id=14627593 bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_1692_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20646..21548
DNA (903bp) protein (301aa)
czcD; cation efflux system protein czcD; K03295 cation efflux system protein, CDF family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalt-zinc-cadmium resistance protein CzcD id=2973321 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
13_1_40cm_4_scaffold_1692_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21569..23113
DNA (1545bp) protein (515aa)
Altronate dehydratase (EC:4.2.1.7)
altronate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-galactarate dehydratase/altronate hydrolase-like protein id=2696008 bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 25 items

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