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13_1_40cm_4_scaffold_18135

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_18135_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13..648
DNA (636bp) protein (212aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit id=4942504 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_18135_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

656..1903
DNA (1248bp) protein (416aa)
clpX; ATP-dependent Clp protease ATP-binding subunit clpX (EC:3.4.21.92) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
clpX; ATP-dependent Clp protease ATP-binding subunit clpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX id=1866218 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_18135_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2109..2576
DNA (468bp) protein (156aa)
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase I id=4070961 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_18135_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2612..3400
DNA (789bp) protein (263aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] id=14625252 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phosphomethylpyrimidine kinase
13_1_40cm_4_scaffold_18135_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3431..4165
DNA (735bp) protein (245aa)
Putative Sec-independent protein translocase protein TatC id=1866211 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Sec-independent protein translocase protein TatC Tax=GWA2_Rokubacteria_73_35_curated
Sec-independent protein translocase protein TatC
13_1_40cm_4_scaffold_18135_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4166..5578
DNA (1413bp) protein (471aa)
rhlB; ATP-dependent RNA helicase RhlB; K03732 ATP-dependent RNA helicase RhlB [EC:3.6.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DEAD/DEAH box helicase domain protein id=4663773 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DEAD/DEAH box helicase
13_1_40cm_4_scaffold_18135_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5615..6610)
DNA (996bp) protein (332aa)
glutamine-fructose-6-phosphate transaminase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glutamine-fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine-fructose-6-phosphate transaminase (Isomerizing) id=1866170 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_18135_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6670..7467)
DNA (798bp) protein (266aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=GWA2_Rokubacteria_73_35_curated
Enoyl-CoA hydratase/isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVX5_ALIDB
enoyl-CoA hydratase/isomerase
13_1_40cm_4_scaffold_18135_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7464..8627)
DNA (1164bp) protein (388aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Arabinose efflux permease family protein id=1866162 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces pristinaespiralis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein
13_1_40cm_4_scaffold_18135_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

8638..9420
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F324_9DELT
3-hydroxyacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_4_scaffold_18135_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9420..10433
DNA (1014bp) protein (338aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methionine synthase (B12-independent) id=1866156 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
vitamin-B12 independent methionine synthase
13_1_40cm_4_scaffold_18135_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10430..11164
DNA (735bp) protein (245aa)
conserved hypothetical protein; putative signal peptide Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1866153 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
conserved protein of unknown function
13_1_40cm_4_scaffold_18135_13
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

11253..12035
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036BA46E
hypothetical protein
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_4_scaffold_18135_14
unknown

Not on your lists

12069..12206
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_4_scaffold_18135_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12210..13004
DNA (795bp) protein (265aa)
hpd; 4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] Tax=GWA2_Rokubacteria_73_35_curated
UPI0002971993 related cluster id=1866141 bin=GWA2_Methylomirabilis_73_35 species=Thermus oshimai genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate isomerase/epimerase
13_1_40cm_4_scaffold_18135_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13005..14531
DNA (1527bp) protein (509aa)
putative fatty-acid--CoA ligase (EC:6.2.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative fatty-acid--CoA ligase (EC:6.2.1.-)
AMP-dependent synthetase and ligase id=4143225 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_18135_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14653..15861)
DNA (1209bp) protein (403aa)
Putative acyl-CoA dehydrogenase id=3814357 bin=GWC2_Methylomirabilis_70_24 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative acyl-CoA dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_18135_18
unknown

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comp(15933..16088)
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_4_scaffold_18135_19
unknown

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comp(16126..16308)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_4_scaffold_18135_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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17082..18083
DNA (1002bp) protein (334aa)
Nitrate reductase (NADH) {ECO:0000313|EMBL:EEF59049.1}; EC=1.7.1.1 {ECO:0000313|EMBL:EEF59049.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobi
Nitrate reductase (NADH) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM56_9BACT
putative sulfite oxidase protein
13_1_40cm_4_scaffold_18135_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18086..18367)
DNA (282bp) protein (94aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22] Tax=GWA2_Rokubacteria_70_23_curated
NUDIX hydrolase id=2592715 bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NUDIX hydrolase
Displaying 21 items

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