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13_1_40cm_4_scaffold_2514

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2514_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..2121)
DNA (2121bp) protein (707aa)
family 3 adenylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Guanylate cyclase (Fragment) id=4492891 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium W5-15b genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2514_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2213..3490)
DNA (1278bp) protein (426aa)
paaK; phenylacetate-CoA ligase Tax=GWA2_Rokubacteria_73_35_curated
Phenylacetate-CoA ligase id=4124058 bin=GWC2_Methylomirabilis_70_24 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phenylacetate-CoA ligase
13_1_40cm_4_scaffold_2514_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3507..5057)
DNA (1551bp) protein (517aa)
Benzoate-CoA ligase family n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KMS4_9FIRM
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_73_35_curated
benzoate-CoA ligase family
13_1_40cm_4_scaffold_2514_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5064..5513)
DNA (450bp) protein (150aa)
enodribonuclease L-PSP n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262650F
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
endoribonuclease
13_1_40cm_4_scaffold_2514_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5533..6951)
DNA (1419bp) protein (473aa)
boxB; benzoyl-CoA oxygenase component B; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Benzoyl-CoA oxygenase component B n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KA18_AZOSB
boxB; benzoyl-CoA oxygenase component B
13_1_40cm_4_scaffold_2514_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6951..8621)
DNA (1671bp) protein (557aa)
hypothetical protein; K15513 benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
benzoyl-CoA-dihydrodiol lyase (EC:4.2.1.17); K15513 benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44] id=14627885 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
benzoyl-CoA-dihydrodiol lyase (EC:4.2.1.17)
13_1_40cm_4_scaffold_2514_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8647..8919)
DNA (273bp) protein (91aa)
XRE family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cupin id=14627886 bin=bin7_NC10_sister species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2514_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9160..10176)
DNA (1017bp) protein (339aa)
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein id=14627887 bin=bin7_NC10_sister species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
13_1_40cm_4_scaffold_2514_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10173..12680)
DNA (2508bp) protein (836aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-hydroxybenzoyl-CoA reductase subunit alpha id=4915860 bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoyl-CoA reductase, alpha subunit
13_1_40cm_4_scaffold_2514_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12677..13153)
DNA (477bp) protein (159aa)
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(2Fe-2S)-binding domain protein id=3729521 bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
13_1_40cm_4_scaffold_2514_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13266..14090
DNA (825bp) protein (275aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative hydrolase or acyltransferase of alpha/beta superfamily id=2767977 bin=GWF2_Methylomirabilis_70_14 species=Bradyrhizobium sp. WSM471 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_2514_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14096..15445
DNA (1350bp) protein (450aa)
Fis family transcriptional regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=14625552 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Fis family transcriptional regulator
13_1_40cm_4_scaffold_2514_13
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15473..16687)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJV4_9PROT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
hypothetical protein
13_1_40cm_4_scaffold_2514_14
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16735..17706)
DNA (972bp) protein (324aa)
Inner-membrane translocator n=1 Tax=Acidovorax sp. NO-1 RepID=H0C415_9BURK
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
inner-membrane translocator
13_1_40cm_4_scaffold_2514_15
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17703..18584)
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2K0S8_9BURK
inner-membrane translocator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
13_1_40cm_4_scaffold_2514_16
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18589..19299)
DNA (711bp) protein (237aa)
livF; high-affinity branched-chain amino acid ABC transporter ATP binding protein (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Betaproteobacteria_66_2
ABC transporter related protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJV8_9PROT
ABC transporter-like protein
13_1_40cm_4_scaffold_2514_17
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19299..19787)
DNA (489bp) protein (163aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K23_RHOP5
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:GAJ37564.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
ABC transporter-like protein
13_1_40cm_4_scaffold_2514_18
unknown

Not on your lists

20282..20494
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_4_scaffold_2514_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20660..21781
DNA (1122bp) protein (374aa)
major facilitator superfamily MFS 1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fosmidomycin resistance protein id=4947488 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major Facilitator Superfamily protein
Displaying 19 items

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