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13_1_40cm_4_scaffold_28051

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_28051_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1..507
DNA (507bp) protein (169aa)
id=4289999 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4289999 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_28051_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(504..1106)
DNA (603bp) protein (201aa)
recombination protein RecR; K06187 recombination protein RecR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Recombination protein RecR id=4677236 bin=GWC2_Methylomirabilis_70_16 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recombination protein RecR
13_1_40cm_4_scaffold_28051_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1119..1433)
DNA (315bp) protein (105aa)
hypothetical protein; K09747 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleoid-associated protein N47_H23170 id=4677235 bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleoid-associated protein
13_1_40cm_4_scaffold_28051_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1430..2269)
DNA (840bp) protein (280aa)
DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase III subunits gamma/tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau id=5017006 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_28051_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2218..3057)
DNA (840bp) protein (280aa)
DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau id=5017006 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_28051_trna_4
unknown

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comp(3445..3534)
DNA (90bp)
transferRNA
13_1_40cm_4_scaffold_28051_trna_3
unknown

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comp(3571..3662)
DNA (92bp)
transferRNA
13_1_40cm_4_scaffold_28051_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3835..4500
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=24594421 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_28051_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4546..4977)
DNA (432bp) protein (144aa)
tRNA-specific adenosine deaminase (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CMP/dCMP deaminase zinc-binding protein id=5017005 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_28051_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5069..5995
DNA (927bp) protein (309aa)
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Binding-protein-dependent transport systems inner membrane component id=3741105 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_28051_9
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6317..6817)
DNA (501bp) protein (167aa)
Cation transport ATPase n=1 Tax=Saccharomonospora azurea SZMC 14600 RepID=H0K4B0_9PSEU
Cation transport ATPase {ECO:0000313|EMBL:EHK87547.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZM
13_1_40cm_4_scaffold_28051_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7030..8655
DNA (1626bp) protein (542aa)
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein id=3741107 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
oligopeptide ABC transporter periplasmic oligopeptide-binding protein
13_1_40cm_4_scaffold_28051_11
unknown

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8663..9040
DNA (378bp) protein (126aa)

This feature has no annotations

13_1_40cm_4_scaffold_28051_12

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comp(9051..10667)
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00038247DC
Glucose dehydrogenase {ECO:0000313|EMBL:AHN98027.1}; TaxID=1447243 species="Bacteria; environmental samples.;" source="uncultured bacterium lac193.;"
fibronectin type III domain-containing protein
13_1_40cm_4_scaffold_28051_trna_2
unknown

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comp(10763..10836)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_28051_trna_1
unknown

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comp(10841..10931)
DNA (91bp)
transferRNA
13_1_40cm_4_scaffold_28051_13
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10999..12747
DNA (1749bp) protein (583aa)
ABC transporter domain-containing protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7U4A5_9DELT
ABC transporter domain-containing protein {ECO:0000313|EMBL:EPR44281.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;"
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_28051_14
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12737..13585)
DNA (849bp) protein (283aa)
ABC transporter, permease protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XBQ4_9BURK
ABC transporter, permease protein {ECO:0000313|EMBL:EFF75840.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromoba
gsiD2; glutathione transporter permease GsiD 2
13_1_40cm_4_scaffold_28051_15
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13585..14529)
DNA (945bp) protein (315aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1J9_SPHTD
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ38116.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales
13_1_40cm_4_scaffold_28051_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(14536..16026)
DNA (1491bp) protein (497aa)
Extracellular solute-binding protein family 5 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1K0_SPHTD
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACZ38117.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae;
13_1_40cm_4_scaffold_28051_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16090..16506
DNA (417bp) protein (139aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-] Tax=GWA2_Rokubacteria_73_35_curated
Phenylacetic acid degradation protein PaaD id=4849797 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phenylacetic acid degradation protein PaaD
13_1_40cm_4_scaffold_28051_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16496..17107
DNA (612bp) protein (204aa)
Putative uncharacterized protein id=5017001 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metallo-dependent hydrolase Tax=GWA2_Rokubacteria_73_35_curated
metal-dependent hydrolase
Displaying 22 items

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