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13_1_40cm_4_scaffold_28696

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_28696_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2..1093)
DNA (1092bp) protein (364aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapL1; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase id=4231234 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_28696_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1105..1308)
DNA (204bp) protein (68aa)
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase
13_1_40cm_4_scaffold_28696_3
unknown

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2265..2456
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_28696_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3424..3861)
DNA (438bp) protein (146aa)
Helix-hairpin-helix motif (Fragment) id=4231238 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence protein ComEA; K02237 competence protein ComEA Tax=GWA2_Rokubacteria_73_35_curated
helix-turn-helix domain-containing protein
13_1_40cm_4_scaffold_28696_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3982..4449
DNA (468bp) protein (156aa)
Isoquinoline 1-oxidoreductase; K07302 isoquinoline 1-oxidoreductase, alpha subunit [EC:1.3.99.16] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003829CAF
Isoquinoline 1-oxidoreductase
13_1_40cm_4_scaffold_28696_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4446..6590
DNA (2145bp) protein (715aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN80_SINAD id=5224646 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_4_scaffold_28696_7
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6640..7863
DNA (1224bp) protein (408aa)
Membrane protein, major facilitator superfamily n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EHN3_GEOBB
major facilitator superfamily transporter
Membrane protein, major facilitator superfamily {ECO:0000313|EMBL:ACH38243.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" sou
13_1_40cm_4_scaffold_28696_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7979..10162)
DNA (2184bp) protein (728aa)
aldehyde dehydrogenase (EC:1.3.99.16)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P474_9BRAD
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS33223.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
13_1_40cm_4_scaffold_28696_9
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10166..10618)
DNA (453bp) protein (151aa)
Putative aldehyde dehydrogenase subunit III n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GH82_9BRAD
putative aldehyde dehydrogenase subunit III
Putative aldehyde dehydrogenase subunit III {ECO:0000313|EMBL:BAL80119.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source
13_1_40cm_4_scaffold_28696_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(10759..11304)
DNA (546bp) protein (182aa)
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alcohol dehydrogenase zinc-binding domain protein id=4231240 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase zinc-binding domain-containing protein
Displaying 10 items

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