ggKbase home page

13_1_40cm_4_scaffold_3139

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3139_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..545)
DNA (543bp) protein (181aa)
Binding-protein-dependent transport systems inner membrane component id=3247809 bin=GWF2_Methylomirabilis_70_14 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
inner membrane ABC transporter permease YcjP
13_1_40cm_4_scaffold_3139_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(548..1486)
DNA (939bp) protein (313aa)
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_4_scaffold_3139_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1488..2783)
DNA (1296bp) protein (432aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_3139_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2976..3218)
DNA (243bp) protein (81aa)
Di-haem cytochrome c peroxidase id=2669493 bin=GWC2_Methylomirabilis_70_16 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
di-heme cytochrome c peroxidase Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_3139_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3312..3458
DNA (147bp) protein (49aa)
id=3879300 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3879300 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3139_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3528..3806
DNA (279bp) protein (93aa)
alkyl hydroperoxide reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=3879298 bin=GWC2_Methylomirabilis_70_16 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peroxiredoxin
13_1_40cm_4_scaffold_3139_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3841..4356
DNA (516bp) protein (172aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_3139_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4394..5482
DNA (1089bp) protein (363aa)
oxidoreductase domain-containing protein id=14626981 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
oxidoreductase domain-containing protein Tax=CSP1_6_Rokubacteria
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_3139_9
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5581..5982
DNA (402bp) protein (134aa)
membrane protein n=1 Tax=Brachybacterium squillarum RepID=UPI0002629AD4
Membrane protein {ECO:0000313|EMBL:EYT63024.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
DoxX family protein
13_1_40cm_4_scaffold_3139_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5979..7076)
DNA (1098bp) protein (366aa)
DegP2 peptidase n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RI98_DESPD
DegP2 peptidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DegP2 peptidase
13_1_40cm_4_scaffold_3139_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7100..7621)
DNA (522bp) protein (174aa)
Putative chromate transporter id=1890908 bin=GWA2_Methylomirabilis_73_35 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromate transport protein ChrA Tax=GWA2_Rokubacteria_73_35_curated
chromate transport protein ChrA
13_1_40cm_4_scaffold_3139_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7618..8169)
DNA (552bp) protein (184aa)
chromate transport protein ChrA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transporter id=1890910 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromate transport protein ChrA
13_1_40cm_4_scaffold_3139_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8174..8917)
DNA (744bp) protein (248aa)
id=14626867 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_3139_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9254..9952)
DNA (699bp) protein (233aa)
two component, sigma54 specific, Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=5017004 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dctD; two-component response regulator, C5-dicarboxylate transport regulator
13_1_40cm_4_scaffold_3139_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10222..10767)
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJA6_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97261.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
13_1_40cm_4_scaffold_3139_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10785..11303)
DNA (519bp) protein (173aa)
hypothetical protein id=14625184 bin=bin7_NC10_sister species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_3139_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11312..11515)
DNA (204bp) protein (68aa)
30S ribosomal protein S21 1 id=4283020 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsU-1; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWC2_Rokubacteria_70_16_curated
rpsU-1; 30S ribosomal protein S21
13_1_40cm_4_scaffold_3139_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11516..11731)
DNA (216bp) protein (72aa)
id=4283019 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4283019 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_3139_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11745..12071)
DNA (327bp) protein (109aa)
Glycine-rich RNA binding protein id=3327195 bin=GWF2_Methylomirabilis_70_14 species=Coprinopsis cinerea genus=Coprinopsis taxon_order=Agaricales taxon_class=Agaricomycetes phylum=Basidiomycota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine-rich RNA binding protein Tax=GWA2_Rokubacteria_70_23_curated
RNP-1 like RNA-binding protein
13_1_40cm_4_scaffold_3139_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12283..12687)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000378E306
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase
13_1_40cm_4_scaffold_3139_21
unknown

Not on your lists

comp(12776..13129)
DNA (354bp) protein (118aa)

This feature has no annotations

Displaying 21 items

View Taxonomy