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13_1_40cm_4_scaffold_3313

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3313_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(26..1012)
DNA (987bp) protein (329aa)
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_3313_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1016..1771)
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4848419 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3313_3
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1861..2820)
DNA (960bp) protein (320aa)
UPI0003CF656F related cluster n=1 Tax=unknown RepID=UPI0003CF656F
Uncharacterized protein {ECO:0000313|EMBL:ESX79996.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
taurine catabolism dioxygenase
13_1_40cm_4_scaffold_3313_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2871..4022)
DNA (1152bp) protein (384aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) id=14625377 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
13_1_40cm_4_scaffold_3313_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4069..4632)
DNA (564bp) protein (188aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Metal dependent phosphohydrolase id=4848465 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_3313_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4629..4808)
DNA (180bp) protein (60aa)
Excisionase/Xis, DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Excisionase/Xis, DNA-binding protein id=4848467 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
excisionase
13_1_40cm_4_scaffold_3313_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4805..5467)
DNA (663bp) protein (221aa)
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=GWA2_Rokubacteria_73_35_curated
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase id=4848469 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3313_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5460..5840)
DNA (381bp) protein (127aa)
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nifU; FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins id=14625373 bin=bin7_NC10_sister species=Oscillibacter sp. 1-3 genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Iron-sulfur cluster assembly scaffold protein
13_1_40cm_4_scaffold_3313_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5837..6991)
DNA (1155bp) protein (385aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=4206292 bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3313_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7034..7357
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=3714008 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3313_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7362..7718
DNA (357bp) protein (119aa)
Putative uncharacterized protein id=3714010 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3313_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7718..7945
DNA (228bp) protein (76aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_3313_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8053..8259)
DNA (207bp) protein (69aa)
Putative uncharacterized protein id=3714014 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
iscX; FeS assembly protein IscX
13_1_40cm_4_scaffold_3313_14
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(8279..8632)
DNA (354bp) protein (118aa)
fdxB; 2Fe-2S ferredoxin; K04755 ferredoxin, 2Fe-2S id=14625367 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
fdxB; 2Fe-2S ferredoxin; K04755 ferredoxin, 2Fe-2S Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
ferredoxin, 2Fe-2S type, ISC system
13_1_40cm_4_scaffold_3313_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8632..10464)
DNA (1833bp) protein (611aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chaperone protein HscA (Hsc66) id=3887998 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hscA; chaperone protein HscA
13_1_40cm_4_scaffold_3313_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10442..11032)
DNA (591bp) protein (197aa)
hscB; co-chaperone protein HscB; K04082 molecular chaperone HscB Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Co-chaperone protein HscB (Hsc20) id=3714094 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
13_1_40cm_4_scaffold_3313_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11116..11445)
DNA (330bp) protein (110aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-sulfur cluster assembly protein IscA id=3714096 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-sulfur cluster assembly protein IscA
13_1_40cm_4_scaffold_3313_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11467..11880)
DNA (414bp) protein (138aa)
nitrogen fixation protein, NifU-like protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins id=14625363 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
scaffold protein
13_1_40cm_4_scaffold_3313_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11894..13120)
DNA (1227bp) protein (409aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=3714107 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3313_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13134..13565)
DNA (432bp) protein (144aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
BadM/Rrf2 family transcriptional regulator
13_1_40cm_4_scaffold_3313_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13653..14924
DNA (1272bp) protein (424aa)
gdh; glutamate dehydrogenase (EC:1.4.1.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gdh; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase id=3714120 bin=GWA2_Methylomirabilis_73_35 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3313_22
unknown

Not on your lists

15145..16023
DNA (879bp) protein (293aa)

This feature has no annotations

13_1_40cm_4_scaffold_3313_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16150..16284
DNA (135bp) protein (45aa)
Glutaredoxin-like protein, YruB-family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_3313_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16274..17620)
DNA (1347bp) protein (449aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3313_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17620..21996)
DNA (4377bp) protein (1459aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3735766 bin=GWC2_Methylomirabilis_70_16 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
chloride channel
13_1_40cm_4_scaffold_3313_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21993..22469)
DNA (477bp) protein (159aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3887908 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Displaying 26 items

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