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13_1_40cm_4_scaffold_3453

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3453_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..896)
DNA (894bp) protein (298aa)
Molybdenum cofactor biosynthesis protein A id=2653035 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=GWA2_Rokubacteria_73_35_curated
moaA; molybdenum cofactor biosynthesis protein A
13_1_40cm_4_scaffold_3453_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(896..2599)
DNA (1704bp) protein (568aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase id=2653038 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM protein Tax=GWA2_Rokubacteria_73_35_curated
radical SAM protein
13_1_40cm_4_scaffold_3453_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2650..4044)
DNA (1395bp) protein (465aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626245 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3453_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4056..4847)
DNA (792bp) protein (264aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase id=2653039 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3453_trna_3
unknown

Not on your lists

comp(4886..4969)
DNA (84bp)
transferRNA
13_1_40cm_4_scaffold_3453_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4981..5352)
DNA (372bp) protein (124aa)
hypothetical protein id=2653040 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_3453_trna_2
unknown

Not on your lists

comp(5396..5468)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_3453_trna_1
unknown

Not on your lists

comp(5505..5576)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_3453_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5603..6601)
DNA (999bp) protein (333aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase id=3919817 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3453_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6731..7720)
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=GWA2_Rokubacteria_73_35_curated
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=3919822 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
13_1_40cm_4_scaffold_3453_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7808..8410)
DNA (603bp) protein (201aa)
Glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glycerol-3-phosphate acyltransferase id=3919825 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycerol-3-phosphate acyltransferase
13_1_40cm_4_scaffold_3453_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8407..8853)
DNA (447bp) protein (149aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=3919891 bin=GWA2_Methylomirabilis_73_35 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3453_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8989..9720)
DNA (732bp) protein (244aa)
2-phosphosulfolactate phosphatase (EC:3.1.3.71); K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable 2-phosphosulfolactate phosphatase id=3919892 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-phosphosulfolactate phosphatase
13_1_40cm_4_scaffold_3453_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9897..11105)
DNA (1209bp) protein (403aa)
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5)
Argininosuccinate synthase id=4765396 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3453_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11098..12021)
DNA (924bp) protein (308aa)
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase id=3919894 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3453_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12021..13214)
DNA (1194bp) protein (398aa)
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) id=14626235 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11)
13_1_40cm_4_scaffold_3453_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13230..14093)
DNA (864bp) protein (288aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=3919897 bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3453_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14115..15476)
DNA (1362bp) protein (454aa)
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein Tax=GWA2_Rokubacteria_73_35_curated
ATP-dependent protease ATPase subunit HslU id=3919900 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein
13_1_40cm_4_scaffold_3453_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15473..16096)
DNA (624bp) protein (208aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] id=14626232 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent protease peptidase subunit
13_1_40cm_4_scaffold_3453_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16093..16965)
DNA (873bp) protein (291aa)
tyrosine recombinase XerD subunit; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tyrosine recombinase XerC id=4819288 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recombinase XerC
13_1_40cm_4_scaffold_3453_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16962..19211)
DNA (2250bp) protein (750aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA topoisomerase id=3919910 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA topoisomerase I
13_1_40cm_4_scaffold_3453_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19211..20104)
DNA (894bp) protein (298aa)
transcriptional regulator, MarR family; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA processing chain A (DprA/Smf) id=3806661 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA protecting protein DprA
13_1_40cm_4_scaffold_3453_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20339..21280)
DNA (942bp) protein (314aa)
Tol-pal system protein YbgF id=3806662 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
tol-pal system protein
13_1_40cm_4_scaffold_3453_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21315..22532)
DNA (1218bp) protein (406aa)
molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis domain-containing protein
13_1_40cm_4_scaffold_3453_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22648..23757)
DNA (1110bp) protein (370aa)
MopC id=3806664 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mopC; protein MopC Tax=GWA2_Rokubacteria_73_35_curated
mopC; protein MopC
13_1_40cm_4_scaffold_3453_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23754..24260)
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase large subunit id=3806665 bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c class I
13_1_40cm_4_scaffold_3453_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24257..24796)
DNA (540bp) protein (180aa)
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of unknown function DUF3341
13_1_40cm_4_scaffold_3453_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24780..28742)
DNA (3963bp) protein (1321aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
Displaying 28 items

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