ggKbase home page

13_1_40cm_4_scaffold_352

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_352_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..1050
DNA (1050bp) protein (350aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=4485927 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_352_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1054..1836
DNA (783bp) protein (261aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase family protein id=3068152 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase
13_1_40cm_4_scaffold_352_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1799..2254)
DNA (456bp) protein (152aa)
Phenylacetic acid degradation-related protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX48_RHOP2
phenylacetic acid degradation-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation-like protein
13_1_40cm_4_scaffold_352_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2284..2865)
DNA (582bp) protein (194aa)
ThiJ/PfpI domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ThiJ/PfpI domain-containing protein id=14625351 bin=bin7_NC10_sister species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ThiJ/PfpI domain-containing protein
13_1_40cm_4_scaffold_352_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2870..3394)
DNA (525bp) protein (175aa)
carbonic anhydrase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
siderophore-binding protein id=4485938 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
carbonic anhydrase
13_1_40cm_4_scaffold_352_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3464..4489
DNA (1026bp) protein (342aa)
Chalcone and stilbene synthase domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chalcone and stilbene synthase domain protein id=14627397 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Chalcone and stilbene synthase domain protein
13_1_40cm_4_scaffold_352_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4521..5279
DNA (759bp) protein (253aa)
SAM-dependent methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
type 11 methyltransferase id=14627396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
methyltransferase type 11
13_1_40cm_4_scaffold_352_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5276..6475
DNA (1200bp) protein (400aa)
Electron transfer oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer oxidoreductase id=14627395 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
monooxygenase FAD-binding protein
13_1_40cm_4_scaffold_352_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6500..7165
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EA8FE3
dimethylmenaquinone methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dimethylmenaquinone methyltransferase
13_1_40cm_4_scaffold_352_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7204..8655)
DNA (1452bp) protein (484aa)
peptidase M23 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M23 id=4485944 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase M23
13_1_40cm_4_scaffold_352_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8685..10556
DNA (1872bp) protein (624aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=14625912 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
13_1_40cm_4_scaffold_352_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10562..12106
DNA (1545bp) protein (515aa)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain M id=3704552 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_352_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12189..13643
DNA (1455bp) protein (485aa)
nuoN-1; NADH dehydrogenase I subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit N id=3704556 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nuoN-1; NADH dehydrogenase I subunit N
13_1_40cm_4_scaffold_352_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13651..14466
DNA (816bp) protein (272aa)
had-superfamily hydrolase, subfamily iia; K02566 NagD protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD-superfamily hydrolase, subfamily IIA id=3704568 bin=GWA2_Methylomirabilis_73_35 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
had-superfamily hydrolase, subfamily iia
13_1_40cm_4_scaffold_352_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14463..16088
DNA (1626bp) protein (542aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=GWA2_Rokubacteria_73_35_curated
FAD dependent oxidoreductase id=4903986 bin=GWC2_Methylomirabilis_70_16 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_352_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16157..17467
DNA (1311bp) protein (437aa)
sn-glycerol 3-phosphate ABC transporter substrate-binding protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC-type sugar transport system, periplasmic component id=4644050 bin=GWF2_Methylomirabilis_70_14 species=Grimontia sp. AK16 genus=Grimontia taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein
13_1_40cm_4_scaffold_352_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17484..18365
DNA (882bp) protein (294aa)
ugpA; protein UgpA; K05814 sn-glycerol 3-phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sn-glycerol-3-phosphate ABC transporter, permease protein id=4238986 bin=GWC2_Methylomirabilis_70_16 species=Polymorphum gilvum genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ugpA; ABC-type sugar transport system, permease components
13_1_40cm_4_scaffold_352_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18365..19264
DNA (900bp) protein (300aa)
ugpE2; sn-glycerol-3-phosphate transport system permease; K05815 sn-glycerol 3-phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sn-glycerol-3-phosphate ABC transporter,permease protein id=4238987 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ugpE2; sn-glycerol-3-phosphate transport system permease
13_1_40cm_4_scaffold_352_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20044..20157
DNA (114bp) protein (38aa)
glycerophosphodiester phosphodiesterase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_352_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20410..21921
DNA (1512bp) protein (504aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerol kinase id=4980423 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerol kinase
Displaying 20 items

View Taxonomy