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13_1_40cm_4_scaffold_4991

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4991_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..1271)
DNA (1269bp) protein (423aa)
putative amidase protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PUTATIVE AMIDASE PROTEIN id=4323718 bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative amidase protein
13_1_40cm_4_scaffold_4991_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1268..3031)
DNA (1764bp) protein (588aa)
carbamoyl transferase Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl transferase id=4759402 bin=GWC2_Methylomirabilis_70_16 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
carbamoyl transferase, NodU family
13_1_40cm_4_scaffold_4991_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3230..3910)
DNA (681bp) protein (227aa)
Putative uncharacterized protein id=4306933 bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_4991_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4001..4732)
DNA (732bp) protein (244aa)
ABC transporter ATP-binding protein, putative branched-chain amino acid transport; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC transporter ATP-binding protein id=14625566 bin=bin7_NC10_sister species=Bordetella parapertussis genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_4991_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4735..5490)
DNA (756bp) protein (252aa)
Branched-chain amino acid ABC transporter ATP-binding protein id=5022300 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_4991_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5492..6505)
DNA (1014bp) protein (338aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625568 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator
13_1_40cm_4_scaffold_4991_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6502..7377)
DNA (876bp) protein (292aa)
livH-3; branched-chain amino acid ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
livH-3; branched-chain amino acid ABC transporter permease id=14625569 bin=bin7_NC10_sister species=Natrinema versiforme genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_1_40cm_4_scaffold_4991_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7377..9644)
DNA (2268bp) protein (756aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4991_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9728..11098)
DNA (1371bp) protein (457aa)
branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
livK; branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein id=14625571 bin=bin7_NC10_sister species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_4991_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

11286..11936
DNA (651bp) protein (217aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14625572 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_4991_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11924..12310)
DNA (387bp) protein (129aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein id=14626718 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4991_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12307..12597)
DNA (291bp) protein (97aa)
prevent-host-death protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Prevent-host-death protein id=4592692 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
prevent-host-death protein
13_1_40cm_4_scaffold_4991_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12682..13206)
DNA (525bp) protein (175aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=GWA2_Rokubacteria_73_35_curated
Intracellular protease, PfpI family id=4900374 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Pfpi family intracellular protease
13_1_40cm_4_scaffold_4991_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13220..13390)
DNA (171bp) protein (57aa)
Putative regulatory protein, FmdB family id=4900375 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
FmdB family regulatory protein
13_1_40cm_4_scaffold_4991_15
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(13421..14872)
DNA (1452bp) protein (484aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] id=14430442 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
succinate-semialdehyde dehydrogenase
13_1_40cm_4_scaffold_4991_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14989..16329)
DNA (1341bp) protein (447aa)
amidase Tax=GWA2_Rokubacteria_73_35_curated
amidase id=14430439 bin=bin3_NC10 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
amidase
13_1_40cm_4_scaffold_4991_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16361..18418)
DNA (2058bp) protein (686aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP C4-dicarboxylate transport system permease DctM
13_1_40cm_4_scaffold_4991_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18415..19107)
DNA (693bp) protein (231aa)
Putative membrane protein id=4900378 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transporter dctQ related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
transporter dctQ related transmembrane protein
13_1_40cm_4_scaffold_4991_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19159..20076)
DNA (918bp) protein (306aa)
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
C4-dicarboxylate ABC transporter
Displaying 19 items

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