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13_1_40cm_4_scaffold_5519

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5519_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..116
DNA (114bp) protein (38aa)
4-oxalocrotonate tautomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-oxalocrotonate tautomerase id=4541114 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5519_2
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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150..500
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q056_9DELT
Helix-hairpin-helix motif protein {ECO:0000313|EMBL:GAM10403.1}; Flags: Precursor;; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.
hypothetical protein
13_1_40cm_4_scaffold_5519_3

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579..2135
DNA (1557bp) protein (519aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_4_scaffold_5519_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2227..3147
DNA (921bp) protein (307aa)
nickel-transporting ATPase (EC:3.6.3.24); K02033 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease id=4621966 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_4_scaffold_5519_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3144..4028
DNA (885bp) protein (295aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2951; ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dppC4; dipeptide transport system permease DppC
13_1_40cm_4_scaffold_5519_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4025..5002
DNA (978bp) protein (326aa)
Oligopeptide ABC transporter ATP-binding protein id=4621968 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_4_scaffold_5519_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4999..5997
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037D6503
ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_5519_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(5972..7066)
DNA (1095bp) protein (365aa)
Adenylate/guanylate cyclase id=3112748 bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate/guanylate cyclase Tax=GWC2_Rokubacteria_70_16_curated
adenylate/guanylate cyclase
13_1_40cm_4_scaffold_5519_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7063..7437)
DNA (375bp) protein (125aa)
response regulator receiver protein; K11443 two-component system, cell cycle response regulator DivK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver protein id=3112750 bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver protein
13_1_40cm_4_scaffold_5519_10
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7422..8954)
DNA (1533bp) protein (511aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" sourc
Histidine kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y592_LEPCP
Displaying 10 items

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