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13_1_40cm_4_scaffold_5605

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5605_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(195..2000)
DNA (1806bp) protein (602aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_1_40cm_4_scaffold_5605_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1997..4060)
DNA (2064bp) protein (688aa)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
N-methylhydantoinase
13_1_40cm_4_scaffold_5605_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4142..4867)
DNA (726bp) protein (242aa)
phophonate C-P lyase system transcriptional regulator PhnF, GntR family; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family id=4849826 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_4_scaffold_5605_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4956..5585)
DNA (630bp) protein (210aa)
Uncharacterized protein id=4741174 bin=GWA2_Methylomirabilis_73_35 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
phosphoribosyltransferase
13_1_40cm_4_scaffold_5605_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5625..6923)
DNA (1299bp) protein (433aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.99.2) id=14626067 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_4_scaffold_5605_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6965..7735
DNA (771bp) protein (257aa)
glycosyl transferase id=4741175 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase family protein
13_1_40cm_4_scaffold_5605_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

7864..8991
DNA (1128bp) protein (376aa)
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
acetamidase/formamidase
13_1_40cm_4_scaffold_5605_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8993..9892
DNA (900bp) protein (300aa)
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein id=14627590 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
periplasmic solute binding protein
13_1_40cm_4_scaffold_5605_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9889..11166
DNA (1278bp) protein (426aa)
ABC-3 protein; K02075 zinc/manganese transport system permease protein id=14627589 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=CSP1_6_Rokubacteria
ABC-3 protein
13_1_40cm_4_scaffold_5605_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11267..12121)
DNA (855bp) protein (285aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_73_35_curated
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=14626066 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_4_scaffold_5605_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12148..12510)
DNA (363bp) protein (121aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4741179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5605_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12524..13048)
DNA (525bp) protein (175aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=GWA2_Rokubacteria_73_35_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5605_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13278..13646
DNA (369bp) protein (123aa)
hypothetical protein id=3474240 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_5605_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13691..14350)
DNA (660bp) protein (220aa)
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=GWA2_Rokubacteria_73_35_curated
HAD family hydrolase
13_1_40cm_4_scaffold_5605_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14434..15210)
DNA (777bp) protein (259aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_4_scaffold_5605_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15306..15623)
DNA (318bp) protein (106aa)
putative thiosulfate sulfurtransferase GlpE (EC:2.8.1.1)
rhodanese-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5605_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15636..16487)
DNA (852bp) protein (284aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold protein id=3474252 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_5605_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16565..17437)
DNA (873bp) protein (291aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626058 bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5605_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17523..17930)
DNA (408bp) protein (136aa)
family 3 adenylate cyclase Tax=GWA2_Rokubacteria_73_35_curated
Family 3 adenylate cyclase id=3474362 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 3 adenylate cyclase
Displaying 19 items

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