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13_1_40cm_4_scaffold_6021

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6021_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2..175
DNA (174bp) protein (58aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thiamine-phosphate pyrophosphorylase id=4973967 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative thiamine-phosphate pyrophosphorylase
13_1_40cm_4_scaffold_6021_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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222..1418
DNA (1197bp) protein (399aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Extracellular ligand-binding receptor id=4973968 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative branched-chain amino acid ABC transporter substrate binding protein
13_1_40cm_4_scaffold_6021_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2774..3706
DNA (933bp) protein (311aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=4973971 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_4_scaffold_6021_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3707..4498
DNA (792bp) protein (264aa)
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=4973972 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_4_scaffold_6021_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4491..5192
DNA (702bp) protein (234aa)
ABC transporter related protein id=4973973 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter
13_1_40cm_4_scaffold_6021_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(5177..6841)
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ76_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60114.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedospha
13_1_40cm_4_scaffold_6021_7
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6838..8319)
DNA (1482bp) protein (494aa)
glycosyl transferase family protein; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
Glycosyl transferase family 2 id=2907808 bin=GWA1_Deltaproteobacteria_52_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
glycosyl transferase family protein
13_1_40cm_4_scaffold_6021_8
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8316..9050)
DNA (735bp) protein (245aa)
NDP-hexose 3-C-methyltransferase TylCIII id=4091136 bin=GWF2_Syntrophobacterales_56_9 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
NDP-hexose 3-C-methyltransferase TylCIII Tax=RBG_16_Deltaproteobacteria_58_17_curated
S-adenosyl-dependent methyltransferase
13_1_40cm_4_scaffold_6021_9
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9810..10028
DNA (219bp) protein (73aa)
hypothetical protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
Uncharacterized protein id=3388582 bin=GWC2_Deltaproteobacteria_56_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
Displaying 9 items

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