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13_1_40cm_4_scaffold_6525

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6525_1
unknown

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comp(1..90)
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_40cm_4_scaffold_6525_2
Pseudoalteromonas undina, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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255..1196
DNA (942bp) protein (314aa)
Cyclase family protein n=1 Tax=Pseudoalteromonas undina NCIMB 2128 RepID=U1LF23_9GAMM
Cyclase family protein {ECO:0000313|EMBL:ERG60602.1}; TaxID=1117320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudo
cyclase family protein
13_1_40cm_4_scaffold_6525_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(1241..2044)
DNA (804bp) protein (268aa)
ABC transporter related id=4748155 bin=GWC2_Methylomirabilis_70_24 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type transporter, ATPase subunit
13_1_40cm_4_scaffold_6525_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2037..2828)
DNA (792bp) protein (264aa)
putative inner membrane component of binding-protein-dependent transport system; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Putative inner membrane component of binding-protein-dependent transport system id=4748156 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative ABC transporter (permease protein)
13_1_40cm_4_scaffold_6525_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(2838..3842)
DNA (1005bp) protein (335aa)
ABC transporter substrate binding protein id=4748157 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter substrate binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_6525_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(3854..4987)
DNA (1134bp) protein (378aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=1700397 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_6525_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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5076..5936
DNA (861bp) protein (287aa)
DMT family permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DMT family permease id=14627694 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DMT family permease
13_1_40cm_4_scaffold_6525_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6038..7240)
DNA (1203bp) protein (401aa)
dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=3696600 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dehydrogenase
13_1_40cm_4_scaffold_6525_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(7254..7577)
DNA (324bp) protein (108aa)
NIPSNAP family containing protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B5C4D3
NIPSNAP family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NIPSNAP family protein
13_1_40cm_4_scaffold_6525_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7667..8119
DNA (453bp) protein (151aa)
Acyl dehydratase id=1700405 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative monoamine oxidase regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
monoamine oxidase MaoC
13_1_40cm_4_scaffold_6525_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8119..9003
DNA (885bp) protein (295aa)
Citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Citryl-CoA lyase id=3209651 bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
citrate lyase
13_1_40cm_4_scaffold_6525_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9047..10063
DNA (1017bp) protein (339aa)
zinc-binding alcohol dehydrogenase family protein; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] id=14623416 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc-binding alcohol dehydrogenase (EC:1.1.1.1)
13_1_40cm_4_scaffold_6525_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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10226..11512
DNA (1287bp) protein (429aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3772777 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
13_1_40cm_4_scaffold_6525_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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11550..11984
DNA (435bp) protein (145aa)
Hemin-binding lipoprotein id=4813980 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dipeptide ABC transporter substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
Displaying 14 items

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