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13_1_40cm_4_scaffold_1156

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1156_1
unknown

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

13_1_40cm_4_scaffold_1156_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(75..3554)
DNA (3480bp) protein (1160aa)
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B9_GEMAT
DNA polymerase III, alpha subunit
13_1_40cm_4_scaffold_1156_3
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3628..4971
DNA (1344bp) protein (448aa)
hypothetical protein, partial n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B72EC4
Uncharacterized protein {ECO:0000313|EMBL:ERK92796.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
putative transporter
13_1_40cm_4_scaffold_1156_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5439..6629
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A3K6_9BACT
hypothetical protein
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1156_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

6707..7573
DNA (867bp) protein (289aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_1156_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7576..8682
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C0_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_1156_7
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(8710..9969)
DNA (1260bp) protein (420aa)
Glu/Leu/Phe/Val dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=14625145 bin=bin7_NC10_sister species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate dehydrogenase
13_1_40cm_4_scaffold_1156_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9990..11111)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037F514D
TPR-repeat-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_1156_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11166..12512
DNA (1347bp) protein (449aa)
M20/M25/M40 family peptidase (EC:3.4.-.-)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000361AF49
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1156_10

Not on your lists

comp(12588..13205)
DNA (618bp) protein (206aa)
oxidoreductase n=1 Tax=Brevibacillus sp. phR RepID=UPI000318C344
Molybdopterin binding protein {ECO:0000313|EMBL:AFK79179.1}; TaxID=1191433 species="Bacteria; environmental samples.;" source="uncultured bacterium F25-01.;"
hypothetical protein
13_1_40cm_4_scaffold_1156_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13255..14016)
DNA (762bp) protein (254aa)
lipB; lipoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Octanoyltransferase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=LIPB_GLOVI
lipB; lipoyltransferase
13_1_40cm_4_scaffold_1156_12
unknown

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comp(14013..14456)
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_4_scaffold_1156_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14453..15841)
DNA (1389bp) protein (463aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C7_GEMAT
dihydrolipoamide dehydrogenase
13_1_40cm_4_scaffold_1156_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15854..17116)
DNA (1263bp) protein (421aa)
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cur
Pyruvate dehydrogenase E2 component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D0_GEMAT
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
13_1_40cm_4_scaffold_1156_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17125..18105)
DNA (981bp) protein (327aa)
pdhB; pyruvate dehydrogenase E1 component beta subunit (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D1_GEMAT
Transketolase central region
13_1_40cm_4_scaffold_1156_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18109..19110)
DNA (1002bp) protein (334aa)
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D2_GEMAT
pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
13_1_40cm_4_scaffold_1156_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19126..20040)
DNA (915bp) protein (305aa)
lipA; lipoyl synthase (EC:2.8.1.-); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=GWC2_Gemmatimonadetes_71_10_curated
Lipoyl synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D3_GEMAT
Lipoyl synthase
13_1_40cm_4_scaffold_1156_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20112..21113)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_1156_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21113..22213)
DNA (1101bp) protein (367aa)
Oxidoreductase n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EGN7_9ACTO
glycine oxidase ThiO Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycine oxidase
13_1_40cm_4_scaffold_1156_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

22262..22480
DNA (219bp) protein (73aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1156_21
unknown

Not on your lists

comp(22477..22935)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_4_scaffold_1156_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22925..23881)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8Z3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1156_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23878..25404)
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N9_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
glycosyl transferase family 2
13_1_40cm_4_scaffold_1156_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(25420..26418)
DNA (999bp) protein (333aa)
glycosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556756 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_4_scaffold_1156_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(26357..28369)
DNA (2013bp) protein (671aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NL60_ROSCS
13_1_40cm_4_scaffold_1156_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

28488..29207
DNA (720bp) protein (240aa)
hypothetical protein
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative uncharacterized protein (Fragment) id=4483522 bin=GWF2_Lentisphaerae_57_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
13_1_40cm_4_scaffold_1156_27
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29232..29921)
DNA (690bp) protein (230aa)
Peptidase C26 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZ86_THEOJ
peptidase C26
Peptidase C26 {ECO:0000313|EMBL:ADL08640.1}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;"
13_1_40cm_4_scaffold_1156_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(29918..30451)
DNA (534bp) protein (178aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_1156_29
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(30461..32653)
DNA (2193bp) protein (731aa)
hypothetical protein n=2 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A8E3DB
TonB-dependent receptor plug
Tax=BJP_IG2102_Ignavibacteriales_35_8
13_1_40cm_4_scaffold_1156_30
unknown

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comp(32650..33186)
DNA (537bp) protein (179aa)

This feature has no annotations

Displaying items 1-30 of 50 in total

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