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13_1_40cm_4_scaffold_142

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_142_1
unknown

Not on your lists

comp(3..1415)
DNA (1413bp) protein (471aa)

This feature has no annotations

13_1_40cm_4_scaffold_142_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1412..3268)
DNA (1857bp) protein (619aa)
protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein kinase n=2 Tax=Chloroflexus RepID=A9WG03_CHLAA
protein kinase
13_1_40cm_4_scaffold_142_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3645..4676)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y7Y1_SORCE
integral membrane transport protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_142_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4669..5607)
DNA (939bp) protein (313aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G391_SORC5 id=5224877 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter ATPase Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter ATPase
13_1_40cm_4_scaffold_142_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(5610..5987)
DNA (378bp) protein (126aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_142_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(5997..7559)
DNA (1563bp) protein (521aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4P3_GEMAT
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AHG89637.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_142_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7580..8791)
DNA (1212bp) protein (404aa)
Multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F8_GEMAT
multidrug resistance protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
multidrug resistance protein
13_1_40cm_4_scaffold_142_8
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8788..10503)
DNA (1716bp) protein (572aa)
ABC superfamily ATP binding cassette transporter permease n=1 Tax=Desmospora sp. 8437 RepID=F5SGB0_9BACL
ABC superfamily ATP binding cassette transporter permease {ECO:0000313|EMBL:EGK11082.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="
iron ABC transporter permease
13_1_40cm_4_scaffold_142_9
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(10500..11477)
DNA (978bp) protein (326aa)
ABC transporter related protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BC73_MEISD
ABC transporter-like protein
ABC-type spermidine/putrescine transport systems ATPase component {ECO:0000313|EMBL:AHY46446.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrob
13_1_40cm_4_scaffold_142_10
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11474..12625)
DNA (1152bp) protein (384aa)
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein n=1 Tax=Desmospora sp. 8437 RepID=F5SGB3_9BACL
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein {ECO:0000313|EMBL:EGK11085.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae;
extracellular solute-binding protein
13_1_40cm_4_scaffold_142_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12641..15118)
DNA (2478bp) protein (826aa)
Putative LmbE-like protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVE1_SOLCM id=5224387 bin=16ft_combo_ws3_JS1 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
LmbE family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
LmbE family protein
13_1_40cm_4_scaffold_142_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15118..16440)
DNA (1323bp) protein (441aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Amidohydrolase id=4817215 bin=GWC2_Ignavibacteria_56_12 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
amidohydrolase
13_1_40cm_4_scaffold_142_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16538..17860
DNA (1323bp) protein (441aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-] id=24585067 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_142_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17826..18392
DNA (567bp) protein (189aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Acyl-CoA dehydrogenase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNS1_9ACTO id=5225245 bin=16ft_combo_ws3_JS1 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_142_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18414..18794)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00035DB205
S23 ribosomal protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_142_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18908..19570)
DNA (663bp) protein (221aa)
Phosphoribosyltransferase n=1 Tax=Saccharopolyspora erythraea D RepID=T2S427_SACER
phosphoribosyl transferase protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_142_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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19709..20998
DNA (1290bp) protein (430aa)
gltA; citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
gltA; citrate synthase (EC:2.3.3.1) id=14430702 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
citrate synthase (EC:2.3.3.1)
13_1_40cm_4_scaffold_142_18
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(21107..22327)
DNA (1221bp) protein (407aa)
rhlE; ATP-dependent RNA helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=RBG_16_Acidobacteria_68_9_curated
ATP-dependent RNA helicase RhlE n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXJ0_JANMA
rhlE; ATP-dependent RNA helicase
13_1_40cm_4_scaffold_142_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

22787..22984
DNA (198bp) protein (66aa)
30S ribosomal protein S21 n=1 Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SMK5_THEAH
30S ribosomal protein S21 Tax=RBG_16_Gemmatimonadetes_66_8_curated
30S ribosomal protein S21
13_1_40cm_4_scaffold_142_20
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(23227..23859)
DNA (633bp) protein (211aa)
XRE family transcriptional regulator Tax=RBG_16_Aminicenantes_63_16_curated
Transcriptional regulator, XRE family id=1901860 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
13_1_40cm_4_scaffold_142_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23949..24644)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V0L2_ROSS1
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Surfeit locus 1 family protein
13_1_40cm_4_scaffold_142_22
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(24641..24889)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030C1AB1
excinuclease ABC subunit C; K07461 putative endonuclease Tax=RBG_16_Anaeromyxobacter_69_14_curated
excinuclease ABC subunit C
13_1_40cm_4_scaffold_142_23
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(24904..25332)
DNA (429bp) protein (143aa)
Peroxiredoxin, OsmC subfamily n=2 Tax=Thermus oshimai RepID=K7QTV8_THEOS
peroxiredoxin, OsmC subfamily
Peroxiredoxin, OsmC subfamily {ECO:0000313|EMBL:AFV75481.1}; TaxID=751945 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai JL-2.;"
13_1_40cm_4_scaffold_142_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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25456..25935
DNA (480bp) protein (160aa)
Glyoxalase-like domain protein
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=24418765 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_4_scaffold_142_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25990..27870
DNA (1881bp) protein (627aa)
Peptidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0ME75_RHOM4
peptidase
Peptidase {ECO:0000313|EMBL:AHG89716.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_142_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(27900..28778)
DNA (879bp) protein (293aa)
Lysyl oxidase protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8HJ09_ACACA
Lysyl oxidase
Lysyl oxidase {ECO:0000313|EMBL:AHG92636.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_142_27
unknown

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comp(28922..29383)
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_4_scaffold_142_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(29377..30615)
DNA (1239bp) protein (413aa)
Regulator of chromosome condensation, RCC1 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQE9_ROSS1
regulator of chromosome condensation, RCC1 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
regulator of chromosome condensation, RCC1
13_1_40cm_4_scaffold_142_29
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30767..34108
DNA (3342bp) protein (1114aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH24_RHOM4
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY47809.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
13_1_40cm_4_scaffold_142_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

34138..35544
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJI9_RHOMR
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG91388.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 51 in total

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