ggKbase home page

13_1_40cm_4_scaffold_1754

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1754_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..686)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC26_GEMAT
peptidase M10A and M12B matrixin and adamalysin
Peptidase M10A and M12B matrixin and adamalysin {ECO:0000313|EMBL:AHG89655.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1754_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

777..3026
DNA (2250bp) protein (750aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037842C0
mmpL; hypothetical protein; K06994 putative drug exporter of the RND superfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
MMPL domain-containing protein
13_1_40cm_4_scaffold_1754_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3023..3256)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H7_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_1754_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3295..3672)
DNA (378bp) protein (126aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H6_GEMAT
putative pilin
Putative pilin {ECO:0000313|EMBL:AHG88689.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1754_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3777..6617)
DNA (2841bp) protein (947aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H5_GEMAT
13_1_40cm_4_scaffold_1754_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6694..6894)
DNA (201bp) protein (67aa)
Cold-shock protein DNA-binding protein
Cold-shock protein DNA-binding protein {ECO:0000313|EMBL:AHG88687.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Cold-shock DNA-binding protein family id=2227709 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
13_1_40cm_4_scaffold_1754_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7039..9315)
DNA (2277bp) protein (759aa)
putative soluble lytic murein transglycosylase; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Probable soluble lytic murein transglycosylase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZR1_THERP
putative soluble lytic murein transglycosylase
13_1_40cm_4_scaffold_1754_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9312..10682)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_1754_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10724..11647
DNA (924bp) protein (308aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=GWC2_Gemmatimonadetes_71_10_curated
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H3_GEMAT
13_1_40cm_4_scaffold_1754_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11689..12240
DNA (552bp) protein (184aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=RBG_16_Gemmatimonadetes_66_8_curated
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H2_GEMAT
13_1_40cm_4_scaffold_1754_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12298..14046
DNA (1749bp) protein (583aa)
Methyl-accepting chemotaxis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H1_GEMAT
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
methyl-accepting chemotaxis protein
13_1_40cm_4_scaffold_1754_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14048..14914)
DNA (867bp) protein (289aa)
AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G9_GEMAT
AraC family transcriptional regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
AraC family transcriptional regulator
13_1_40cm_4_scaffold_1754_13
unknown

Not on your lists

15278..15535
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_4_scaffold_1754_14
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15536..16045)
DNA (510bp) protein (170aa)
Appr-1-p processing domain protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QLY0_CHLP8
Appr-1-p processing domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
hypothetical protein
13_1_40cm_4_scaffold_1754_15
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(16053..17612)
DNA (1560bp) protein (520aa)
beta-lactamase Tax=GWA2_Ignavibacteria_54_16_curated
Beta-lactamase id=4183595 bin=GWA2_Ignavibacteria_55_11 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
beta-lactamase
13_1_40cm_4_scaffold_1754_16
unknown

Not on your lists

20394..20792
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_4_scaffold_1754_17
unknown

Not on your lists

20922..21083
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_4_scaffold_1754_18
unknown

Not on your lists

21125..21277
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_4_scaffold_1754_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

21418..23364
DNA (1947bp) protein (649aa)
putative two-component sensor histidine kinase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
metal dependent phosphohydrolase id=7202093 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
putative two-component sensor histidine kinase
13_1_40cm_4_scaffold_1754_20
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23361..24371
DNA (1011bp) protein (337aa)
Secretion protein HlyD n=1 Tax=Cupriavidus basilensis OR16 RepID=H1RYE5_9BURK
putative Co/Zn/Cd efflux system membrane fusion protein
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23831.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
13_1_40cm_4_scaffold_1754_21
unknown

Not on your lists

comp(24703..24957)
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_1754_22
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25879..26394
DNA (516bp) protein (172aa)
GAF domain protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CEY4_9RHOB
GAF domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
13_1_40cm_4_scaffold_1754_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

26481..27128
DNA (648bp) protein (216aa)
ATP binding protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SMB4_THEM7
hypothetical protein; K06927 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ATP-binding protein
13_1_40cm_4_scaffold_1754_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

27125..28717
DNA (1593bp) protein (531aa)
putative serine/threonine protein kinase (EC:2.7.11.1); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAM0_GEMAT
protein kinase
Displaying 24 items

View Taxonomy