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13_1_40cm_4_scaffold_2220

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2220_1
unknown

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comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

13_1_40cm_4_scaffold_2220_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(53..349)
DNA (297bp) protein (99aa)
xanthine dehydrogenase (EC:1.17.1.4) id=24470538 bin=RBG_19FT_COMBO_GAL15_69_19 species=Streptomyces sp. FxanaD5 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
XdhC/CoxI family protein
13_1_40cm_4_scaffold_2220_3
unknown

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661..849
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_4_scaffold_2220_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1145..2527)
DNA (1383bp) protein (461aa)
beta-lactamase; K07576 metallo-beta-lactamase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Beta-lactamase-like protein id=3877314 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase
13_1_40cm_4_scaffold_2220_5
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

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comp(2524..4173)
DNA (1650bp) protein (550aa)
SulP family sulfate permease n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AK02_IGNAJ
SulP family sulfate permease
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
13_1_40cm_4_scaffold_2220_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(4390..4800)
DNA (411bp) protein (137aa)
DoxX n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXK4_RUBXD
DoxX
DoxX {ECO:0000313|EMBL:ABG03874.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
13_1_40cm_4_scaffold_2220_7
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4907..5365
DNA (459bp) protein (153aa)
Transcriptional regulator, MarR family n=3 Tax=Paenibacillus mucilaginosus RepID=F8F752_PAEMK
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:AFC32805.1}; TaxID=1116391 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilagi
13_1_40cm_4_scaffold_2220_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(5403..6902)
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000367CDC1
Tetratricopeptide TPR_2 Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_2220_9
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(6978..8468)
DNA (1491bp) protein (497aa)
Peptidase S8 and S53, subtilisin, kexin, sedolisin n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARY8_RUBXD
peptidase S8/S53 subtilisin kexin sedolisin
Peptidase S8 and S53, subtilisin, kexin, sedolisin {ECO:0000313|EMBL:ABG05840.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; R
13_1_40cm_4_scaffold_2220_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(8606..9187)
DNA (582bp) protein (194aa)
id=12557778 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_2220_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9502..9921
DNA (420bp) protein (140aa)
nitrogen regulatory protein P-II n=1 Tax=Deinococcus apachensis RepID=UPI00035D5BF3
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:AHG93827.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2220_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9918..11267
DNA (1350bp) protein (450aa)
Ammonium transporter NrgA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A872_GEMAT
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2220_13
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11260..12075)
DNA (816bp) protein (272aa)
Similar to mannosyltransferase B id=4572074 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
group 1 glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:EQD84045.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;
Displaying 13 items

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