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13_1_40cm_4_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_296_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1..417
DNA (417bp) protein (139aa)
Putative cytochrome c n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Z8_GEMAT
putative cytochrome c
Putative cytochrome c {ECO:0000313|EMBL:BAH38708.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27
13_1_40cm_4_scaffold_296_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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447..1130
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIZ7_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60081.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source=
13_1_40cm_4_scaffold_296_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1187..2188)
DNA (1002bp) protein (334aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_296_4
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2202..2864)
DNA (663bp) protein (221aa)
ddlA; D-alanine-D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_16_Gamma2_60_9_curated
ddlA; D-alanine-D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase domain protein id=1761207 bin=GWD2_Deltaproteobacteria_55_8 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_296_5
R_WOR_2_48_11, WOR-2, Bacteria

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comp(2861..3166)
DNA (306bp) protein (102aa)
D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
hypothetical protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000373396F
13_1_40cm_4_scaffold_296_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3269..4516)
DNA (1248bp) protein (416aa)
Major facilitator family transporter n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N611_ERYLH
major facilitator family transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
major facilitator family transporter
13_1_40cm_4_scaffold_296_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4578..5669)
DNA (1092bp) protein (364aa)
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46] id=24490458 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
deoxyhypusine synthase-like protein
13_1_40cm_4_scaffold_296_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(5671..6411)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABM6_GEMAT
hypothetical protein; K06966 Tax=GWC2_Gemmatimonadetes_71_10_curated
Conserved hypothetical protein CHP00730
13_1_40cm_4_scaffold_296_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(6368..7549)
DNA (1182bp) protein (394aa)
class V aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
class V aminotransferase id=14632116 bin=bin9_gal15 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
class V aminotransferase
13_1_40cm_4_scaffold_296_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7596..7838
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABN2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_296_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7835..8782
DNA (948bp) protein (316aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=14627129 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_296_12
unknown

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8779..9066
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_296_13
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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9113..11548
DNA (2436bp) protein (812aa)
Glutamyl peptidase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SEP6_9BACT
Glutamyl peptidase {ECO:0000313|EMBL:BAL54632.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glutamyl peptidase
13_1_40cm_4_scaffold_296_14
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11640..12524)
DNA (885bp) protein (295aa)
putative phosphohydrolase; K07098 Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
putative phosphohydrolase; K07098 id=15193185 bin=GWC2_NOV_55_46 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
metallophosphoesterase
13_1_40cm_4_scaffold_296_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12521..13987)
DNA (1467bp) protein (489aa)
Peptidase M20 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ0_KORVE
peptidase M20 Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase M20
13_1_40cm_4_scaffold_296_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14021..15016)
DNA (996bp) protein (332aa)
Metallo hydrolase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUV3_9BACT
Zn-dependent hydrolase
Zn-dependent hydrolase {ECO:0000313|EMBL:AHG88047.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_296_17
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(15013..16185)
DNA (1173bp) protein (391aa)
Major facilitator superfamily MFS_1 n=2 Tax=Chloroflexus RepID=A9WGT9_CHLAA
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABY36255.1}; Flags: Precursor;; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chlor
13_1_40cm_4_scaffold_296_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16233..16985)
DNA (753bp) protein (251aa)
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVR2_9BACT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_296_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17174..17590)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JM57_9BACT
Integral membrane protein CcmA involved in cell shape determination Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Integral membrane protein CcmA involved in cell shape determination
13_1_40cm_4_scaffold_296_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17592..17942)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KKT9_9FIRM
peptidase M23 Tax=GWC2_Gemmatimonadetes_71_10_curated
metalloendopeptidase-like membrane protein
13_1_40cm_4_scaffold_296_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18279..19175)
DNA (897bp) protein (299aa)
Chromosome partitioning protein ParB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=GWC2_Gemmatimonadetes_71_10_curated
parB-like partition protein
13_1_40cm_4_scaffold_296_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19172..20008)
DNA (837bp) protein (279aa)
ParA family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZN8_CORCM
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cobyrinic acid ac-diamide synthase
13_1_40cm_4_scaffold_296_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20168..22036)
DNA (1869bp) protein (623aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
13_1_40cm_4_scaffold_296_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22110..22484)
DNA (375bp) protein (125aa)
S23 ribosomal protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=14424288 bin=bin11_novelCP species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin11_novelCP organism_group=Unknown_CP
S23 ribosomal protein
13_1_40cm_4_scaffold_296_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22623..23882)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344BF53
hypothetical membrane protein; K01992 ABC-2 type transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical membrane protein
13_1_40cm_4_scaffold_296_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23875..24837)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA7F
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
ABC transporter related protein
13_1_40cm_4_scaffold_296_27
RLO_PLX_64_10, Bacteria

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comp(24852..25304)
DNA (453bp) protein (151aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein id=14431319 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_296_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(25301..26569)
DNA (1269bp) protein (423aa)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=GWC2_Gemmatimonadetes_71_10_curated
Cysteine desulfurase id=2101213 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sufS; cysteine desulfurase, SufS subfamily
13_1_40cm_4_scaffold_296_29
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(26566..27351)
DNA (786bp) protein (262aa)
sufD; putative iron-sulfur cluster assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RBG_16_Acidobacteria_68_9_curated
SufD, needed for fhuF Fe-S center production/stability id=2101211 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sufD; sufD, needed for fhuF Fe-S center production/stability
13_1_40cm_4_scaffold_296_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(27790..28575)
DNA (786bp) protein (262aa)
sufC; putative iron-sulfur cluster assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Fe-S cluster assembly ATP-binding protein SufC id=4899150 bin=GWA2_OP3_52_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
FeS assembly ATPase SufC
Displaying items 1-30 of 33 in total

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