ggKbase home page

13_1_40cm_4_scaffold_4030

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4030_1
unknown

Not on your lists

1..291
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_4_scaffold_4030_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

447..1343
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XWS0_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36345.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_4_scaffold_4030_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1536..2168)
DNA (633bp) protein (211aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_4030_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2173..3999)
DNA (1827bp) protein (609aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_7
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
13_1_40cm_4_scaffold_4030_5
unknown

Not on your lists

comp(4001..4276)
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_4_scaffold_4030_6
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4494..5417
DNA (924bp) protein (308aa)
Putative Response regulator PleD n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1P9_9DELT
Putative Response regulator PleD {ECO:0000313|EMBL:EFK10304.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
diguanylate cyclase
13_1_40cm_4_scaffold_4030_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5434..7869)
DNA (2436bp) protein (812aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W1_GEMAT
putative exopolysaccharide biosynthesis protein
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAH37621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
13_1_40cm_4_scaffold_4030_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8193..9725
DNA (1533bp) protein (511aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
NtrC family two-component response regulator
NtrC family two-component response regulator {ECO:0000313|EMBL:BAH37620.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
13_1_40cm_4_scaffold_4030_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9722..10894
DNA (1173bp) protein (391aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5V9_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_4_scaffold_4030_10
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

11120..14326
DNA (3207bp) protein (1069aa)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) (EC:2.6.1.-) Tax=GWA1_Bdellovibrionales_52_35_curated
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) (EC:2.6.1.-)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(Beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCR4_DICT6
13_1_40cm_4_scaffold_4030_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14323..15279
DNA (957bp) protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;"
Bifunctional polymyxin resistance protein ArnA (EC:4.1.1.35 2.1.2.9)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GQP4_CLOSY
13_1_40cm_4_scaffold_4030_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15272..16828
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000364C474
oligosaccharide translocase Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
oligosaccharide translocase
13_1_40cm_4_scaffold_4030_13

Not on your lists

16825..17175
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K414_DESAC
Marine sediment metagenome DNA, contig: S01H4_S05714 {ECO:0000313|EMBL:GAG92978.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
Displaying 13 items

View Taxonomy