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13_1_40cm_4_scaffold_415

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_415_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..519
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9S1_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_415_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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647..1045
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT11_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88851.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1055..1543
DNA (489bp) protein (163aa)
hypothetical protein id=12556247 bin=CNBR_ACIDO species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DinB family protein
DinB family protein {ECO:0000313|EMBL:AHG88634.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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1651..2118
DNA (468bp) protein (156aa)
UPI0003CED91A related cluster n=1 Tax=unknown RepID=UPI0003CED91A
cupin region Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
signal peptide protein
13_1_40cm_4_scaffold_415_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2216..3880
DNA (1665bp) protein (555aa)
Peptidase M1 membrane alanine aminopeptidase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GQK3_9BACT
Peptidase M1 membrane alanine aminopeptidase
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:AHG92401.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_6
unknown

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3923..4336
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_40cm_4_scaffold_415_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4438..6231
DNA (1794bp) protein (598aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003792F76
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:CDM64608.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogene
choline dehydrogenase-like flavoprotein
13_1_40cm_4_scaffold_415_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6228..6788
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000382830F
Gluconate 2-dehydrogenase subunit 3 {ECO:0000313|EMBL:CDM64605.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
13_1_40cm_4_scaffold_415_9
unknown

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7458..7955
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_4_scaffold_415_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7970..9349
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EC13D
glycoside hydrolase family 29 (alpha-L-fucosidase)
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:AHG89157.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9410..9889
DNA (480bp) protein (160aa)
Transcription activator effector-binding protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I555_9BURK
transcription activator effector binding protein
Transcription activator effector binding protein {ECO:0000313|EMBL:AHG92928.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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10114..10674
DNA (561bp) protein (187aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Putative uncharacterized protein id=4143928 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
13_1_40cm_4_scaffold_415_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(10685..11059)
DNA (375bp) protein (125aa)
protein of unknown function Spy-related protein
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_415_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11259..11432
DNA (174bp) protein (58aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_415_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11479..11802
DNA (324bp) protein (108aa)
type I antifreeze protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
regulatory protein, FmdB family
Uncharacterized protein id=1250997 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_4_scaffold_415_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


11799..13445
DNA (1647bp) protein (549aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RBG_16_Gemmatimonadetes_66_8_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8E9_GEMAT
13_1_40cm_4_scaffold_415_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13442..14371
DNA (930bp) protein (310aa)
PfkB family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F0_GEMAT
PfkB family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
PfkB domain protein
13_1_40cm_4_scaffold_415_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14368..15393
DNA (1026bp) protein (342aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F1_GEMAT
phosphoribosylformylglycinamidine cyclo-ligase
13_1_40cm_4_scaffold_415_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15410..16387
DNA (978bp) protein (326aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90650.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_415_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16350..17465
DNA (1116bp) protein (372aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-
Riboflavin biosynthesis protein RibD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F3_GEMAT
riboflavin biosynthesis protein RibD
13_1_40cm_4_scaffold_415_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17447..18052
DNA (606bp) protein (202aa)
ribE; riboflavin synthase alpha chain (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Riboflavin synthase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F4_GEMAT
Lumazine-binding domain protein
13_1_40cm_4_scaffold_415_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

18034..19239
DNA (1206bp) protein (402aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F5_GEMAT
3,4-dihydroxy-2-butanone 4-phosphate synthase
13_1_40cm_4_scaffold_415_23
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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19242..19727
DNA (486bp) protein (162aa)
ribH_[H]; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUK4_THIND
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
13_1_40cm_4_scaffold_415_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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19708..20121
DNA (414bp) protein (138aa)
N utilization substance protein B homolog n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=NUSB_SOLUE
nusB; antitermination protein NusB; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N utilization substance protein B-like protein
13_1_40cm_4_scaffold_415_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20130..21269
DNA (1140bp) protein (380aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F8_GEMAT
glycosyl transferase group 1
13_1_40cm_4_scaffold_415_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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21238..21564
DNA (327bp) protein (109aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_415_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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21561..22475
DNA (915bp) protein (305aa)
hprK; HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
HPr kinase/phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F9_GEMAT
hprK; HPr kinase/phosphorylase
13_1_40cm_4_scaffold_415_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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22468..22845
DNA (378bp) protein (126aa)
phosphotransferase system enzyme IIA component; K02744 PTS system, N-acetylgalactosamine-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphotransferase system enzyme IIA component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G0_GEMAT
PTS system fructose subfamily IIA component
13_1_40cm_4_scaffold_415_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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22842..23123
DNA (282bp) protein (94aa)
Phosphotransferase system enzyme IIB component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G1_GEMAT
phosphotransferase system enzyme IIB component Tax=GWC2_Gemmatimonadetes_71_10_curated
PTS system sorbose subfamily IIB component
Displaying 29 items

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