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13_1_40cm_4_scaffold_4898

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4898_1
unknown

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comp(3..188)
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_4_scaffold_4898_2
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(185..649)
DNA (465bp) protein (155aa)
UPI0003D1A06F related cluster n=1 Tax=unknown RepID=UPI0003D1A06F
Galactoside O-acetyltransferase {ECO:0000313|EMBL:KKH45520.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarc
galactoside-O-acetyltransferase
13_1_40cm_4_scaffold_4898_3

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comp(654..1727)
DNA (1074bp) protein (358aa)
Methicillin resistance protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TLV7_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CEG11092.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
hypothetical protein
13_1_40cm_4_scaffold_4898_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1696..2883)
DNA (1188bp) protein (396aa)
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase {ECO:0000313|EMBL:BAH38657.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH38657.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" sou
Glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U7_GEMAT
13_1_40cm_4_scaffold_4898_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2932..4137)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000362410A
surface antigen gene Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative cell surface protein
13_1_40cm_4_scaffold_4898_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(4150..5112)
DNA (963bp) protein (321aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U8_GEMAT
glycosyl transferase family 2
13_1_40cm_4_scaffold_4898_7
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(5109..6566)
DNA (1458bp) protein (486aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
RNA polymerase sigma-54 factor, RpoN
13_1_40cm_4_scaffold_4898_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6563..7765)
DNA (1203bp) protein (401aa)
putative ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V0_GEMAT
ABC transporter related protein
13_1_40cm_4_scaffold_4898_9
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(7762..9198)
DNA (1437bp) protein (479aa)
Marine sediment metagenome DNA, contig: S01H1_S04962 Tax=RBG_16_Acidobacteria_68_9_curated
13_1_40cm_4_scaffold_4898_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(9201..9821)
DNA (621bp) protein (207aa)
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
protein of unknown function DUF1239
13_1_40cm_4_scaffold_4898_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9818..10792)
DNA (975bp) protein (325aa)
kdsD; arabinose 5-phosphate isomerase (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
Arabinose 5-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V3_GEMAT
KpsF/GutQ family protein
13_1_40cm_4_scaffold_4898_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10761..11423)
DNA (663bp) protein (221aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=GWC2_Gemmatimonadetes_71_1
hypothetical protein n=1 Tax=Selenomonas bovis RepID=UPI000379B5FB
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
13_1_40cm_4_scaffold_4898_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11416..12228)
DNA (813bp) protein (271aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWC2_Gemmatimonadetes_71_10_curated
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V5_GEMAT
13_1_40cm_4_scaffold_4898_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12231..13904)
DNA (1674bp) protein (558aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CTP synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V6_GEMAT
CTP synthase
13_1_40cm_4_scaffold_4898_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13901..14527)
DNA (627bp) protein (209aa)
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=KDSB_GEMAT
3-deoxy-manno-octulosonate cytidylyltransferase
13_1_40cm_4_scaffold_4898_16
R_WOR_2_63_39, WOR-2, Bacteria

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comp(14717..15322)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036CEE32
glutamine amidotransferase of anthranilate synthase
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
13_1_40cm_4_scaffold_4898_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15331..15876)
DNA (546bp) protein (182aa)
Acetyltransferase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U372_MYXSD
N-acetyltransferase GCN5 Tax=RBG_16_Gemmatimonadetes_66_8_curated
acetyltransferase
13_1_40cm_4_scaffold_4898_18
R_PER_ii_51_9, PER-ii, Bacteria

Not on your lists

15944..16948
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B34E6B
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51_9_curated
hypothetical protein
Displaying 18 items

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