ggKbase home page

13_1_40cm_4_scaffold_6078

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6078_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1..555
DNA (555bp) protein (185aa)
glycerophosphoryl diester phosphodiesterase family protein; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1SA33_SHEAM
glycerophosphoryl diester phosphodiesterase
13_1_40cm_4_scaffold_6078_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

552..1412
DNA (861bp) protein (287aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTX8_HALO1
13_1_40cm_4_scaffold_6078_3
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1393..1617
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:AET92493.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp.
hypothetical protein
13_1_40cm_4_scaffold_6078_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1686..2468
DNA (783bp) protein (261aa)
amidohydrolase; K07045 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
amidohydrolase 2
amidohydrolase; K07045 id=1247849 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_40cm_4_scaffold_6078_5
unknown

Not on your lists

2440..3213
DNA (774bp) protein (258aa)

This feature has no annotations

13_1_40cm_4_scaffold_6078_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3252..4628
DNA (1377bp) protein (459aa)
putative zinc protease y4wA (EC:3.4.24.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Peptidase M16 domain protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QYA3_CHLT3
peptidase M16 domain-containing protein
13_1_40cm_4_scaffold_6078_7
unknown

Not on your lists

comp(4508..5467)
DNA (960bp) protein (320aa)

This feature has no annotations

13_1_40cm_4_scaffold_6078_8
unknown

Not on your lists

comp(5555..6382)
DNA (828bp) protein (276aa)

This feature has no annotations

13_1_40cm_4_scaffold_6078_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6948..8165
DNA (1218bp) protein (406aa)
amidohydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5895F
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90870.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6078_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8162..9370
DNA (1209bp) protein (403aa)
Amidohydrolase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LT89_HALO1
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG90871.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6078_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(9395..9649)
DNA (255bp) protein (85aa)
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L27 id=4959337 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Gloeocapsa sp. PCC 7428 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
50S ribosomal protein L25
13_1_40cm_4_scaffold_6078_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(9657..9974)
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A931_GEMAT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rplU; 50S ribosomal protein L21
13_1_40cm_4_scaffold_6078_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10009..11592)
DNA (1584bp) protein (528aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A932_GEMAT
ribonuclease, Rne/Rng family
13_1_40cm_4_scaffold_6078_14
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

11858..12604
DNA (747bp) protein (249aa)
hypothetical protein Tax=RBG_16_Aminicenantes_63_16_curated
hypothetical protein id=24431290 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_6078_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12601..13821)
DNA (1221bp) protein (407aa)
Acyl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A933_GEMAT
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AHG90877.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6078_16
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13988..15205)
DNA (1218bp) protein (406aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:BAH38744.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAH38744.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmati
ATP-dependent DNA helicase RecQ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A934_GEMAT
13_1_40cm_4_scaffold_6078_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15235..15654)
DNA (420bp) protein (140aa)
Chaperonin, 10 kDa n=1 Tax=uncultured marine bacterium Ant4D5 RepID=Q2PXZ9_9BACT
groES; putative 10 kDa chaperonin Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperonin Cpn10
13_1_40cm_4_scaffold_6078_18

Not on your lists

15829..17055
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AAO91891.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_4_scaffold_6078_19

Not on your lists

17055..17810
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AAO91890.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_4_scaffold_6078_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17814..18248)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GF32_9BACL
protein of unknown function DUF1094
Uncharacterized protein {ECO:0000313|EMBL:AHG89607.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6078_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(18306..20918)
DNA (2613bp) protein (871aa)
peptidase S9 prolyl oligopeptidase active site domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein id=8267197 bin=CD_OP8_4m species=Zavarzinella formosa genus=Zavarzinella taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Displaying 21 items

View Taxonomy